Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03569 ATGGAAGCAGAGCATCATCAAGATGCCTCAATCGCTATCGGAAGCCTTTACGTTAAAGTGATGACCGACGAACAAATGGAACTGCTGAGGCAACAGATATCTGTCTACGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCAATCACCACTCAACAGGACCTCGCAGGACTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATAACCGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAACTTCAAATTCTGGAGCGAATTTTTGATGAGGGAAATGGCACTCCAAGCAAGCAGAAGATCAAGGAGATAACAATTGAACTGGGCCAACATGGTCAAATATCAGAGACGAATGTGTATAACTGGTTCCAGAACAGAAGGGCTCGTTCAAAGAGGAAGCAACTCGCTCCGGCAGCAAATGTCGCGGAGCCAGAAACCGAGACGGAAGTCGATTCTCCGAGAGAGAAAAAGATACGCGCCGCCGAGAGCGTTCAGGTTGTTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGACATGTACATCCACAGTCCTGACTTAGAGCCAGTGCTGCGGTCGTTGCAGTTGGAGAAGAAGCCGCATCTCAGCCACCTCGCCGGGAATAAAAATAGAAGCACTTCTCAATTCACTGCAATGGCGGCTCCTAACATGGATCAGTTCGAAGCGTATTTCAGGAGAGCAGATTTGGACGGAGATGGCAGAATCAGTGGAGCAGAAGCCGTCTCTTTTTTCATGGGATCCAATTTGCCCAAACAAGTTCTCGCTCAGGTATGGGCGTATGCTGATCAGGCCAAAACTGGTTTCCTTGGACGCGCAGAGTTTTTTAATGCTCTGAGGTTAGTTACTGTGGCTCAGAGTAAGCGAGATTTAACGCCTGACATTGTGAAGGCAGCTTTATATGGTCCTGCTGCCGCTAAAATCCCTGCGCCGCAGATTAATCTTGCTTCTGTACCTCAACCTGTCCAGAATGCGAGGCCCCATGCTGTGTCCGTTGGGCAGATGGGTGTTACTGCACCCAATTCGGCTCAAGGTTTTGCCTATAGAGGACAAGGGTTAGCAGGTCCTGGTGCAAACCCGCAATATCATCCTTCGCAGCAGAATCCTGCGATCCGACCTCATCAATCCATGCCTGTTTCCGGCGCTCCGCATCCGCATCAGGGTGTTGCAGGCCCAGATATTTCTAGAGGAGTTAACATGGGGGGTCACAATTTCTCAAATCCTGGGCTATCAAATGATTGGAATAAAGCCAGGCCTGGTATGGTGGCCACCAGACCTGCAGGAATGAACCCGTCGGCTGCCTTACAGACGTCACAATCTCCAGTCTCACCAATGCCCCAGTCATCTTCAGTCTCTCCAATGTCACAGTTATCCCCAGTCTCACCAATGCCCCAGTCAACAACTGTTCACACTAAAGCATTGAGTGTTTCTGGAAATGGGTTCTCTTCTAATCCAGTTTTGGGCAATGATTTTTTCTCTGCCGCCTCATCAACACCGAAACAAGAACCTGCTGGACACAGTTATTCTGTTACCAATGTCTCATCAGCCATTGTTCCTGTTTCCACTGGTCCCCAGCCTGCAAATAAGCAAAATTCACTTGATTCATTGCAGGGTGCATTCTCATCGGTGCTGCCTGCAAATAGTCAGTTTCAGCGGCCACAGTCTGCACCAAACCAGCAAATTAAACCACAAGCTTCTTCGCCACATACACCATCTGGGATGACAGGTGGGGTTGGAAATGCAAATTCTGACAATGTGCAGCTTTCTTGGCCAAAAATGAAACCTACTGATGTGCAGAAATATACAAAGGTGTTTTTGGAAGTTGACACTGACAGGGATGGGAAGATCACTGGCGAGCAGGCTCGCAGTCTTTTTTTAAGCTGGAGATTACCAATAGAGGTGTTAAAGAAGGTGTGGGACTTGTCTGATCAAGACAATGATAGCATGCTTTCTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAACGGTACAGGGAAGGCCGTCCTCTTCCACAGTCTCTTCCAAGCAATGTCATGTTTGATGAGACGTTGATGTCTATGACAGGCCAACCAAAAAATGCTCCTGGAAATGCAGCCTGGGGTATCAGCCAAGGTTTTCAGCAGCAGCAACAAGGGATGCCAGGTGCTCGGCCAGTGGTACCAACTGCTGGTTTCAGGCCACCAGTCCATGGAAGTTCTGCTCAGGCTGATTTCACTACACAGCCCAACCAGCAAAAGTCAGGAACACCTGTGTTGGAGGATTCCTTTCTGAATCGCACAGATAGTGGTGAGCAGAATACATCGAACACGAAGCCTCAAGATGCAACAACTGCAGAGAAAAAGCCTCCTATAAAACGGCTGTTTCCTTGTTTCTGCCAAAATCTTGTTCCAGTAGAAAGGAAAGGACACACAAGTACAGGTTCACAGTTGTTTGGTACTCCCTTCAGAATTAATGATGATTGTTTGTCTGAAGAAGCTCAGAACGTTATTTTGGATTCAAAGGAGAAGATGGAGCTTTACCGGAACAAAATGCAGGAGCTGGCCATACCGCCGGTGGCTCACTTTCAAGCAGAATCATTGGGCAAGAAATACGAAGAGAAATACAAACAAGTAGCCGAAATAGCATCAAAATTGACTGTTGAAGAAGCTAAATTTCGTGATATACAGCAAGGGCTTCATTGGCCTCGCCCTTGGCCAAATCTGCTTGTGATAGGGATAAGAAAAGATTGTATAAATAAAGGCTGGGTAGAAGGGATGGGGGTTGTTGATTGTTTAGTTGTTAACGGGTACATACCTGTTGAAGAGGGTTATGCCTCTGCGTTCTATCTGTATAGACATTATACTGAAAGGAAGGTGGAACTGCAGCAAGCCATTGTCAAAATTGAACAAGGAGGCAGTGCAGATGGCATTCTTCAGAAAAATCCACAGGTCCGTGCTGAACGCATACAGTCAGATCTTGAGGAGTTATTTAAGGCTCTAGTTGATCGGTGCAAGAAACATGGGATAGATGTGAAGTCAATTACAATGGTTCAGCTTCCTGCTGGTTGGCAACCTGGAATTCCAGAGGGAGCTGCACTTTGGGATGAAGAGTGGGATAAATTTGAGGATGAAGGATTTGCCAATGATCTTACTTTTGCCACCAAAAAGGCATCTTCAAAACCAAAACCCGTATCTATTGACGGAGAACAAAATTTCTCTGATGATAACTCTATTCACGGTTCACCTATGAAAGCAAACGGGAAGCAAGAAAACTCTGCTAACGGTGATTATACAGTTGAGGATTACGCACATAGTGAAGAAGACCTGGCTAGAAGCCCCCACGATAGTCTAGCTGGGAGGAGTACCTTGGAGAGTCCTTCTCAAGTATTCTCGAATGCTGACTTTGGAAAAGGTTCTGAAGCAGATGCAGAAACACATAGTGTGAGGCATCTATCTAGTAATTATGACGTTATAATCTATGGCAACAGAAGTTTTGACGAATCGACCTGGGCATTTGACAACAATGATGATGAGGACTCAGTGTGGGGTTTCAAGACCAAGGACTCTGACTTCGACCAGGGAGATTTCTTCAAATCTGATGATTTTGGTATAAACCCAATCAGAACAGGATCTACACATACGGATAGCACGTTCCAGACAAAAAGCCCATTTACTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAGTTCGAAAATTCTCCTCGGTACAGTGAGGCGGGGGATCATTTCTTTGACATGTCAAGGTTTGATTCCTTCAGGCACGAAAGTGGATATTCTCCACAGCCAGAGAGGCTTACGAGATTTGATTCCATAAATAGCAGTAAGGATTTTGGCTTTGGTAATGATAAATTCACAAGGTTTGATTCCGTAAGTAGCAGTAAGGATTTTGGCTTTGGTAATGATAAATTCACAAGGTTTGATTCCATAAGTAGCAGCAAAGATTTTGGCAACAGTAATGATCAATTCACAAGGTTTGACTCCATAAGTGGCAGCAAGGATTTTGGGTACAGTCCTGAGAAGCTCCAAAGGTTTGATTCCATGAGTAGCAACAATGATTTCGGTTTCGGTGGACAAGGCCATGCAAGGTTTGACTCAATAAGTAGCACCAAAGACTTCGGTCCCAGTGGTGCATTCACATTCGATGACTCTGATCCATTTGGCTCCTCTGGCCCTTTTAAGGTCTCTTCAGAAAACCATTCTCCGAAAAAGGGTTCAGATAACTGGAGTGCATTCTAG 4287 0.4593 MEAEHHQDASIAIGSLYVKVMTDEQMELLRQQISVYATICEQLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAANVAEPETETEVDSPREKKIRAAESVQVVQPFENSSPHRIKDMYIHSPDLEPVLRSLQLEKKPHLSHLAGNKNRSTSQFTAMAAPNMDQFEAYFRRADLDGDGRISGAEAVSFFMGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLASVPQPVQNARPHAVSVGQMGVTAPNSAQGFAYRGQGLAGPGANPQYHPSQQNPAIRPHQSMPVSGAPHPHQGVAGPDISRGVNMGGHNFSNPGLSNDWNKARPGMVATRPAGMNPSAALQTSQSPVSPMPQSSSVSPMSQLSPVSPMPQSTTVHTKALSVSGNGFSSNPVLGNDFFSAASSTPKQEPAGHSYSVTNVSSAIVPVSTGPQPANKQNSLDSLQGAFSSVLPANSQFQRPQSAPNQQIKPQASSPHTPSGMTGGVGNANSDNVQLSWPKMKPTDVQKYTKVFLEVDTDRDGKITGEQARSLFLSWRLPIEVLKKVWDLSDQDNDSMLSLKEFCFALYLMERYREGRPLPQSLPSNVMFDETLMSMTGQPKNAPGNAAWGISQGFQQQQQGMPGARPVVPTAGFRPPVHGSSAQADFTTQPNQQKSGTPVLEDSFLNRTDSGEQNTSNTKPQDATTAEKKPPIKRLFPCFCQNLVPVERKGHTSTGSQLFGTPFRINDDCLSEEAQNVILDSKEKMELYRNKMQELAIPPVAHFQAESLGKKYEEKYKQVAEIASKLTVEEAKFRDIQQGLHWPRPWPNLLVIGIRKDCINKGWVEGMGVVDCLVVNGYIPVEEGYASAFYLYRHYTERKVELQQAIVKIEQGGSADGILQKNPQVRAERIQSDLEELFKALVDRCKKHGIDVKSITMVQLPAGWQPGIPEGAALWDEEWDKFEDEGFANDLTFATKKASSKPKPVSIDGEQNFSDDNSIHGSPMKANGKQENSANGDYTVEDYAHSEEDLARSPHDSLAGRSTLESPSQVFSNADFGKGSEADAETHSVRHLSSNYDVIIYGNRSFDESTWAFDNNDDEDSVWGFKTKDSDFDQGDFFKSDDFGINPIRTGSTHTDSTFQTKSPFTFDDSVPATPVSKFENSPRYSEAGDHFFDMSRFDSFRHESGYSPQPERLTRFDSINSSKDFGFGNDKFTRFDSVSSSKDFGFGNDKFTRFDSISSSKDFGNSNDQFTRFDSISGSKDFGYSPEKLQRFDSMSSNNDFGFGGQGHARFDSISSTKDFGPSGAFTFDDSDPFGSSGPFKVSSENHSPKKGSDNWSAF 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03569 1428 Gene3D - 606 695 - -
Vimu10g03569 1428 Pfam Cytoskeletal-regulatory complex EF hand 606 691 IPR000261 GO:0005515
Vimu10g03569 1428 ProSiteProfiles EH domain profile. 612 695 IPR000261 GO:0005515
Vimu10g03569 1428 Pfam Homeodomain 80 140 IPR001356 GO:0003677
Vimu10g03569 1428 Gene3D - 228 322 - -
Vimu10g03569 1428 ProSiteProfiles EH domain profile. 232 322 IPR000261 GO:0005515
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 749 792 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 1073 1107 - -
Vimu10g03569 1428 ProSiteProfiles EF-hand calcium-binding domain profile. 645 680 IPR002048 GO:0005509
Vimu10g03569 1428 ProSiteProfiles EF-hand calcium-binding domain profile. 231 266 IPR002048 GO:0005509
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 1109 1123 - -
Vimu10g03569 1428 SUPERFAMILY EF-hand 600 695 IPR011992 -
Vimu10g03569 1428 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Vimu10g03569 1428 SUPERFAMILY EF-hand 228 311 IPR011992 -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 445 485 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 564 602 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 1406 1428 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 375 389 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 1127 1143 - -
Vimu10g03569 1428 Gene3D - 82 144 - -
Vimu10g03569 1428 SMART eh_3 605 700 IPR000261 GO:0005515
Vimu10g03569 1428 SMART eh_3 225 320 IPR000261 GO:0005515
Vimu10g03569 1428 CDD EH 616 682 IPR000261 GO:0005515
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 1066 1155 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 435 485 - -
Vimu10g03569 1428 CDD homeodomain 80 142 IPR001356 GO:0003677
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 141 163 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 362 411 - -
Vimu10g03569 1428 Coils Coil 839 859 - -
Vimu10g03569 1428 SUPERFAMILY Homeodomain-like 79 142 IPR009057 -
Vimu10g03569 1428 SMART efh_1 649 677 IPR002048 GO:0005509
Vimu10g03569 1428 SMART efh_1 235 263 IPR002048 GO:0005509
Vimu10g03569 1428 SMART efh_1 269 297 IPR002048 GO:0005509
Vimu10g03569 1428 SMART efh_1 615 643 IPR002048 GO:0005509
Vimu10g03569 1428 SMART HOX_1 78 145 IPR001356 GO:0003677
Vimu10g03569 1428 Pfam EF hand 237 253 IPR002048 GO:0005509
Vimu10g03569 1428 CDD EH 236 302 IPR000261 GO:0005515
Vimu10g03569 1428 PANTHER EH DOMAIN 229 1287 - -
Vimu10g03569 1428 MobiDBLite consensus disorder prediction 722 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03569 Vimu-Chr10 45201238 45215004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03569 228 348 EF-hand Containing Proteins AT1G20760 27.481 1.04e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu10g03569 EF-hand_4 7.4e-11 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03569 K12472 - tpra:123899274 1085.86