Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03567 ATGAAAGGAGGCAAGTCAAAAACCGAATCTAAGAGAGGCGATGCCAAATCTCTGTTGATTTTGGATTTCATTGATTTTGCTCCGAATTTCAGACTTGCTGTGAATAAGAAGGGTGCGCCAGCCAAGGCCAGGAAACCCGCAGGCAAGGGCAAGGCTGCTAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGAAACAATTTAACAAGGAACATCCTGACAACAAAGCTGTGTCCGCTGTGGGAAAAGCTGCCGGAGCAAAATGGAAGTCATTGTCTGATGCTGAAAAAGCACCCTATGTGGCAAAGTCTGAGAAAAGAAAGGTGGAGTATGAGAAAAGCATGAGAGCCTACAACAAGAAACAGTCGGAAGGTCCTACTGGTGGAGATGAAGAAGAGTCTGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGACGAGGAGGGCAGTGCCGAGGAGGAAGATGACGATTAG 492 0.4654 MKGGKSKTESKRGDAKSLLILDFIDFAPNFRLAVNKKGAPAKARKPAGKGKAAKDPNKPKRPPSAFFVFMKQFNKEHPDNKAVSAVGKAAGAKWKSLSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQSEGPTGGDEEESEKSVSEVNDEDDDEEGSAEEEDDD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03567 163 MobiDBLite consensus disorder prediction 141 163 - -
Vimu10g03567 163 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 159 IPR031061 -
Vimu10g03567 163 CDD HMG-box_AtHMGB1-like 60 116 - -
Vimu10g03567 163 MobiDBLite consensus disorder prediction 89 163 - -
Vimu10g03567 163 SUPERFAMILY HMG-box 47 129 IPR036910 -
Vimu10g03567 163 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 59 124 IPR009071 -
Vimu10g03567 163 SMART hmgende2 58 125 IPR009071 -
Vimu10g03567 163 Coils Coil 106 126 - -
Vimu10g03567 163 MobiDBLite consensus disorder prediction 104 140 - -
Vimu10g03567 163 Pfam HMG (high mobility group) box 59 124 IPR009071 -
Vimu10g03567 163 Gene3D High mobility group box domain 43 157 IPR036910 -
Vimu10g03567 163 MobiDBLite consensus disorder prediction 37 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03567 Vimu-Chr10 45189992 45191293 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu10g03567 HMG_box 9.3e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03567 K25507 - gmx:100500173 182.57