Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03562 ATGATTAAATATACTATTACTAATCAGGTTATAACTTTATTCCTCCTTTCAGATCCGACCCAAGACAAAGAACCTCTAAGTTGGAGTTCTCGAATGAAGATTGCTGTCGGAGCTGCTCGTGGCCTCGAGTATCTCCATTGTAAAGCAGATCCACCTGTTATTTACAGAGACTTGAAATCTGCTAACATCTTGTTAGATAATGAATTCAACCCAAAACTATCAGATTTTGGGCTCGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCACCTGAGTATGCCATGAGCGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTAATCACTGGACGTAGAGCAATAGACACCAGTAGAAAGCCAGGAGAGCAAAACTTGGTTTCGTGGTCTCGTCCATATTTTAGTGACCGGAGAAAGTTTGTGCATATGGTTGACCCTCTTTTACAAGGCAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCCATAACTGCCATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTTATTGGTGATATTGTAGTTGCACTGGAATACCTAGCTTCTCAGAGTATTACTGAAGTGCATAGACATGGTGGGCGCAGCTCACCGCAACAACGATCTTCGGAAATGGACAGAAATTAA 705 0.427 MIKYTITNQVITLFLLSDPTQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDTSRKPGEQNLVSWSRPYFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQSITEVHRHGGRSSPQQRSSEMDRN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03562 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Vimu10g03562 234 Pfam Protein kinase domain 21 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03562 234 SUPERFAMILY Protein kinase-like (PK-like) 21 205 IPR011009 -
Vimu10g03562 234 MobiDBLite consensus disorder prediction 220 234 - -
Vimu10g03562 234 Gene3D Transferase(Phosphotransferase) domain 1 13 225 - -
Vimu10g03562 234 FunFam Serine/threonine-protein kinase PBS1 12 222 - -
Vimu10g03562 234 PIRSF ILK 15 219 - -
Vimu10g03562 234 PANTHER OS07G0668900 PROTEIN 16 214 - -
Vimu10g03562 234 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03562 234 SMART serkin_6 4 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03562 234 MobiDBLite consensus disorder prediction 215 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03562 Vimu-Chr10 45158677 45163393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03562 16 209 Glycoside Hydrolase AT3G07070 65.979 7.78e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu10g03562 Pkinase 8.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03562 - - gmx:100796595 368.237