Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03559 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGATGGAAGCTCCACCACCAGATGGAATAATAACAACAACAACAATGGATTTTGACTACATGGGTGAGCTTTTCTCAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCAGGGTGCTGCTTCTGGGACACAACAAGAAGGCCACAACAACAACATGGTTAATGTTGTTGTTGGTTGTGGAGATGGTGGTGGTCAAGAGTTGCAGCCTGAAACTATTACAACTGAAGGAGCATCCGAAGGGGTGAGAAGATGGAGGTTTGCACCCACACCTGCTCCTGCACCTGGACCTTCCATAATGGAGAAGCTAATAAGGGCCCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTTTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAGGGCGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCGAAGGAATTGTTGCCAGGATTGCCCGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCTAGAGTATGATGTGCGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCATGAACTTGAGAGTGTTTGCAAAGCACTTGAGGGACACATATGCTCAAGAAGTGTTCTCGGTATGTCCCTTTTGTCCCTGGTACCCCTAGGATTTTACAGAATATGGCATGGTTTTGCTGTTGATCTTAGAAGCTCAAAACAATTAAATATTCATAATGTGAAGGCATGCAACAGATCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGTCGGCACTCAGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCAAAAATCAGGCCTTTTTACGAGTCTTGCACTGAACACCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTGTCACCAACCAACCATGTTTCTCAGATGATATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATTACGCGAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGACACGGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGATTGCAGTGACAGTGAAGAGCAGAGAAAGATGCTCACATCGTTGTCCATCATTATACAAAGGCTTTGTCGAAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTCGTCAATTGATGAAATGATTTTCCTTGCAGATGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACACAAAGGGATGGTTGCCTCATTGGATACTGAAGAAAAGTTAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTAATTTTAAAGGAAACCTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGGGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGGTAAGTCTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCTTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAAGCATGTTCTCGACTCTGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGCTCATTGAGTCCAGAAGGGACATCAAAATCTCCCTCTTCCTCCTGTGGTCAGAGTTCCATTTCAAGCCATTCCTGCTTCAGCATGTCAGAGCTACAGGGGCAGCATCACACAACCAACATTGCAGGTAACAAAGATTCCACCATGGCTGGTGAAGATTCTGCAGATGTTGCACTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATCAGGATAAAGCAAGGCTCTTGCCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCAAAAAACCAGTATGAACGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCACACAGAGTAAAAGTCACATACGGTGATGAAAAATCTCGGTTTCGGATGCCCAAGAAGTGGGGCTATGAAGATCTTATGCAGGAAATTGGTAGGAGATTTAATGTGAGTGAAATGAGCAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAATGCCACCATCAAACTAAGCCTACAAAAATCTAGTCATAGTTTGAGAAGTTCTTTAGAATTTAGATAA 2853 0.443 MMRDGGVTSSSASMMEAPPPDGIITTTTMDFDYMGELFSDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHNESQGAASGTQQEGHNNNMVNVVVGCGDGGGQELQPETITTEGASEGVRRWRFAPTPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHALEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTHELESVCKALEGHICSRSVLGMSLLSLVPLGFYRIWHGFAVDLRSSKQLNIHNVKACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPKIRPFYESCTEHHLLKGEGVAGGAFVTNQPCFSDDITSLSKKDYPLSHYARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVDCSDSEEQRKMLTSLSIIIQRLCRSLRVISDKELEEANSSIDEMIFLADGGFDRTVICEELQHKGMVASLDTEEKLSETTGRKFSDPRQQQESPNFKGNLDCVRECSTSVQGNLSSVGMSKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGGKSVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTSMFSTLNQTDNPNSISTQPDPGSLSPEGTSKSPSSSCGQSSISSHSCFSMSELQGQHHTTNIAGNKDSTMAGEDSADVALKRIRSEAELKSLNQDKARLLPRSLSQETLGEHPKNQYERPLLKTSSKVDAHRVKVTYGDEKSRFRMPKKWGYEDLMQEIGRRFNVSEMSKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSENATIKLSLQKSSHSLRSSLEFR 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03559 950 SUPERFAMILY CAD & PB1 domains 855 941 - -
Vimu10g03559 950 ProSiteProfiles RWP-RK domain profile. 619 705 IPR003035 -
Vimu10g03559 950 MobiDBLite consensus disorder prediction 1 15 - -
Vimu10g03559 950 SUPERFAMILY GAF domain-like 231 311 - -
Vimu10g03559 950 Pfam PB1 domain 857 938 IPR000270 GO:0005515
Vimu10g03559 950 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g03559 950 CDD PB1_NLP 857 937 IPR034891 -
Vimu10g03559 950 MobiDBLite consensus disorder prediction 726 769 - -
Vimu10g03559 950 Gene3D - 185 314 IPR029016 -
Vimu10g03559 950 ProSiteProfiles PB1 domain profile. 856 939 IPR000270 GO:0005515
Vimu10g03559 950 PANTHER PROTEIN NLP8 106 946 IPR045012 GO:0003700
Vimu10g03559 950 Pfam RWP-RK domain 634 685 IPR003035 -
Vimu10g03559 950 MobiDBLite consensus disorder prediction 73 93 - -
Vimu10g03559 950 Gene3D - 854 937 - -
Vimu10g03559 950 SMART PB1_new 856 939 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03559 Vimu-Chr10 45113454 45117258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03559 27 941 NLP Transcription Factor Family AT1G20640 45.523 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu10g03559 PB1 3.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03559 - - gmx:100785135 1405.58