Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03532 ATGGGAGACACAGAGAGTTGCAATAGCGGAATTTTGAATTCTGGATGGAATCATCGATGTCCAAAACAGAGACAGAAGGTTGGAGTTTACAACGAGGTTTTGTGTAGGCTTAAGGAATTGAATGTCCCAGAAGCTGTGGTTCCTGGTTTTGAGGACGATCTTTGGGCGCACTTCTATCGCCTTCCCGCAAGGCACACCAAATCTTCGTATGCGTTGGACATGAATGTGGAGAGGGCAGAAGAAGTTCTTATGCATAAGAGGTTACTGGACATCGCCGGAGGCCCAACTACAGCAATCGGACCTGCAATTGAAGTCCGTCTTGTACAGGTTCGTTCTGCATCTGCTTCTGCTGGTGGTTCTAGTAAATCTCTTCTTTTAAATTCACAAAGTAAAGTTTGTCCTGAAGATTCTGGTATACCAGGCAGCATGAGGCATCTTCCATCCTCCACCTGCCTTCGGCCAATGCACGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGTTGACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAACAGACGGCTATTCGTTGGATGTTTTTGTTGTTGGTGGTTGGCCAATAGAGGAGACGAAGAAATTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGCAACATCAATTGAAAGAAAATGGAAGTCTTCCTACTAGTACTACTGCAAAGCAAGAGCAAACCGGGATGAACTTTATCTGGAGAATTGATGCCGGGCGTCTGAGATATGAAAAGAAAATTGCATCTGGACCTTTGAGTGATTTGTATAAAGGTACATTCTGCAATCAAGATGTAGCTATCAAGGTTTTAAAGCACGAGAATTTGAATGAAAATATACAAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAGCACAAAAATGTTGTTAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTGTACCTGGTCACAGAATACATGCCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACAGCCCTTGCTCTTCCATCTTTACTCAAAGTGGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGTGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTGGCTAGAGTGCACAATCAGTCTGGCATAATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAGACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCATTGTGCTTTGGGAACTGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTAGGAGTGATCCAGAAGGGTTTAAGGCCTAAAATTCCAAGCCATACTCATTCAAAGTTGGTAGAATTGCTTCACTGGTGTTGGCACCACGATTCATCTTTGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTACGTGTGACCAAGACGGTTACTGGGGAATGTGAAGGCTAG 1566 0.4246 MGDTESCNSGILNSGWNHRCPKQRQKVGVYNEVLCRLKELNVPEAVVPGFEDDLWAHFYRLPARHTKSSYALDMNVERAEEVLMHKRLLDIAGGPTTAIGPAIEVRLVQVRSASASAGGSSKSLLLNSQSKVCPEDSGIPGSMRHLPSSTCLRPMHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTTDGYSLDVFVVGGWPIEETKKLKHELAKKIQKLQQHQLKENGSLPTSTTAKQEQTGMNFIWRIDAGRLRYEKKIASGPLSDLYKGTFCNQDVAIKVLKHENLNENIQREFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMPGGSMFDFLHKQKTALALPSLLKVAIDVSEGMKYLHQNNIIHRDLKAANLLIDENGVVKVADFGVARVHNQSGIMTAETGTYRWMAPEVIEHRPYDHKADVFSFAIVLWELLTGKLPYEHLSPLQAAVGVIQKGLRPKIPSHTHSKLVELLHWCWHHDSSLRPNFSEILEFLLRVTKTVTGECEG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03532 521 Pfam Protein tyrosine and serine/threonine kinase 260 508 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 ProSiteProfiles Protein kinase domain profile. 259 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03532 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Vimu10g03532 521 PRINTS Tyrosine kinase catalytic domain signature 370 388 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 PRINTS Tyrosine kinase catalytic domain signature 435 457 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 PRINTS Tyrosine kinase catalytic domain signature 333 346 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 PRINTS Tyrosine kinase catalytic domain signature 416 426 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 PRINTS Tyrosine kinase catalytic domain signature 479 501 IPR001245 GO:0004672|GO:0006468
Vimu10g03532 521 SMART serkin_6 259 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03532 521 Coils Coil 207 230 - -
Vimu10g03532 521 FunFam Serine/threonine-protein kinase isoform 1 249 337 - -
Vimu10g03532 521 ProSiteProfiles ACT domain profile. 157 236 IPR002912 -
Vimu10g03532 521 Gene3D Transferase(Phosphotransferase) domain 1 336 519 - -
Vimu10g03532 521 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 123 508 - -
Vimu10g03532 521 SUPERFAMILY Protein kinase-like (PK-like) 238 508 IPR011009 -
Vimu10g03532 521 CDD STKc_MAP3K-like 265 508 - -
Vimu10g03532 521 Gene3D Phosphorylase Kinase; domain 1 249 335 - -
Vimu10g03532 521 SUPERFAMILY ACT-like 155 225 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03532 Vimu-Chr10 44912817 44918434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03532 5 515 MAP Kinase Kinase Kinase AT4G35780 54.317 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu10g03532 PK_Tyr_Ser-Thr 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03532 - - vra:106761427 953.355