Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03531 ATGACCCAAAGAGAGGAAGTTGTGCTTGATTTTGAAGACAACAATGGCCGCAGCAACAGCAAAGATGAAAATTTAGCATCGAAAGGTGTTGTCAACGGTCCAAGTGGCAAGCTTCATCAAGACTTGCAGGAAAAACGAAGAGGCAGTGAATCAACAAGAAAGAGAAAGCAGGATCAGCAAAAAAACGAAGAAATCCATCTTCAAACTTCACATTCACAAGAAAGCGTGGTGAGGTCTTCTTCGAACAATTCAACTCCACGATACTCGTGGAAATCATCAATAAGCAGAACAAAGTCTCGGCTGATAGACCCTCCAGAGGAATCATGCGCAAATTCAGAGTCAAGTGAACAAAAAGCGGCAGAAAATGATGACAGTGTTGAGGACATGCCTGAAATTTATAAGAAAACGAGGTTCAGTGCGTTCTCACTGCTTCAGTGGCTATGTCTGGCCTTAATAATCGTAGCCTTGCTTTCAAACATTTGGATATCGTGCTTGCAAAAACTCAAACTCTGTGGCCTTCCCCTGTGGGAATGGGAGACAATGATTTTGGTTATACTTTGTGGGCGTTTGCTCTCAGGTTGGGTAATCAAGCTAATCGTCTTCTTCGTGGAACGCAATTTCATACTGCGAAAACGAGTGCTGTATTTTGTGTACGGTTTGAAACACTCAGTGAAAAACTGTGTCTGGTTGGGTCTTGTTCTGCTGGTCTGGCATTTTCTTTTGGTCAACGCGGTGAAGAAAAAGGTCAACGACAGGATTTTGTCGTGTGTGACAAAGGTTGTGGTGTGTCTGTTCATCGGCACTCTTTTGTGGCTCCTTAAAACGATCCTCGTGAAGGTGTTCGCCTTGCACTTCCACGTGAAAACATTCTTCGAACGGATTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGGTTGAGGGAAGAGGAAGAAGGCGAAGATAGATCCGTTAGGAGGGTGTTGTGTAATAAGAAGAAGAAGCGAGATGAGGAAATGTCGATCGAGCAGTTGCATAGGTTGAATAAGAGAAATATATCAGCGTGGAATATGAAGAGAATGATCAACATCGTCATGCATGGGTCGTTTACTACATTGGACGAACGTATTTTGTGTTCAGATGTTGAGGATGAGCCTTTGCTGCAACTTCGAAGCGAAAACCAAGCAAAGATCGCAGCTCAGAAAATTTTTCATAACGTTGCGCAACCAGGATCCCAATGCATTTTCTTGCAAGATGTGATGCAGTTCATGCGAAGAGACGAGGCTTTGAAGTCAATGGATCTGTTGGGAGCAGCGTGTGCAGAACATGGGATCAGCATGTCTTCTCTTACAGAGTGGATGGTGAATGCTTTCAGGGAGAGAAGGGCACTGGCACTATCACTGAAAGACACGAAAACTGCTGTGGATGATCTCCATAACATGTTGAACATGATTGTCGGCATTGTCATTTTGATTGTCTGGCTTGCCATACTAGGAACTCCAATCCTACACTTCCTTGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTCGGGAATTCTTGCAGAACTGTTTTTGAAGCAATCATCTTCTTATTCGTGATGCACCCATTTGATGTTGGCGATCGATGTGAAGTAGATGGAATCCAGATGGTAGTGGAAGAGATGAATATACTGACAACAGTGTTTCTGAAGTGCGATAACCAGAAGGTTACATACCCAAACAGTGTTCTGGCTACCAAACCGATTAGTAATTATCAACGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGCATTCATGTCTCCACCCCATTAGATAAAGTTGCAACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAACAGTGGCATGCTGCACCAATGGTGATAATGAAGGATGTGGAAGAGTTGAACAAAGTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATGAAAGAAAGATGGAACAGGAGAGCGGAGTTGATTGAAGAGATTATCAAAGTGTTGAAGGAACTTGATATTGAATACAGGCTTCTCCCTTTTGATGTCAATCTTACAAAACAACCTTCTCTGCTCTCTAACAAGCTTCCATCTAATTGGAAAACTTGTGCCACCTCTCTCTCTTAG 2151 0.431 MTQREEVVLDFEDNNGRSNSKDENLASKGVVNGPSGKLHQDLQEKRRGSESTRKRKQDQQKNEEIHLQTSHSQESVVRSSSNNSTPRYSWKSSISRTKSRLIDPPEESCANSESSEQKAAENDDSVEDMPEIYKKTRFSAFSLLQWLCLALIIVALLSNIWISCLQKLKLCGLPLWEWETMILVILCGRLLSGWVIKLIVFFVERNFILRKRVLYFVYGLKHSVKNCVWLGLVLLVWHFLLVNAVKKKVNDRILSCVTKVVVCLFIGTLLWLLKTILVKVFALHFHVKTFFERIREALFSQYVIETLSCDRLREEEEGEDRSVRRVLCNKKKKRDEEMSIEQLHRLNKRNISAWNMKRMINIVMHGSFTTLDERILCSDVEDEPLLQLRSENQAKIAAQKIFHNVAQPGSQCIFLQDVMQFMRRDEALKSMDLLGAACAEHGISMSSLTEWMVNAFRERRALALSLKDTKTAVDDLHNMLNMIVGIVILIVWLAILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGIQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHVSTPLDKVATMKRRIIEYIERKNEQWHAAPMVIMKDVEELNKVNMSVWLTHKMNYQDMKERWNRRAELIEEIIKVLKELDIEYRLLPFDVNLTKQPSLLSNKLPSNWKTCATSLS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03531 716 Coils Coil 660 680 - -
Vimu10g03531 716 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 43 708 IPR016688 -
Vimu10g03531 716 MobiDBLite consensus disorder prediction 69 99 - -
Vimu10g03531 716 FunFam Predicted mechanosensitive ion channel 537 586 - -
Vimu10g03531 716 MobiDBLite consensus disorder prediction 39 68 - -
Vimu10g03531 716 SUPERFAMILY Sm-like ribonucleoproteins 527 586 IPR010920 -
Vimu10g03531 716 Gene3D - 537 586 IPR023408 -
Vimu10g03531 716 Pfam Mechanosensitive ion channel 478 683 IPR006685 GO:0016020|GO:0055085
Vimu10g03531 716 MobiDBLite consensus disorder prediction 1 126 - -
Vimu10g03531 716 MobiDBLite consensus disorder prediction 1 19 - -
Vimu10g03531 716 PIRSF Memb_At2g17000 3 715 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03531 Vimu-Chr10 44908122 44910778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03531 49 714 Mechanosensitive Ion Channel Family AT1G78610 48.295 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03531 K22048 - cave:132190409 816.224