Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03528 ATGCCTCAAAAACACAACACCGTGGTCTACCTCCATGGGACCCTCGATCTGGTAATCGTCGAGGCTCGCTGCCTTCCCAACATGGATTTGCTCTCCGAGCGTGTCCGAAGGTTCTTCTCCGCCCTCAACACTTGCAGCGCCTCCATATCCGGAAAAAGGAAGCTCCACCGCGCCCGCCCCCGCCACCACAAGATCATCACCAGCGATCCTTACGTCACCGTGTGCCTCGCCGGAGCCACCGTCGCGCGCACCCGCGTGATCTCTAATTCGCAGAGCCCTTCCTGGGACGAGCACTTCAAGATCCCGCTCGCGCACCCAGCCGCGCAGGTCGACTTCTTCGTCAAGGACAACGACATGTTTGGCGCCGACCTCATCGGAGTCGTCACCGTCTCCGCCGAGAGGATCCTCTCCGGCGAACCCATCAGCGACTGGTTCCCGATCATCGGCTCGTTCGGGAAGCAGCCGAAGCCTGACTGCGCGCTGCGCCTAGCGATGAAATTTACGAGGTGCGAGAACACTCGCATGTTCCGGTCCGTCAAGGAACCGGATCCGGATCGGTTCGTGGTTCGGGACTCGTATTTCCCGGTCCGTCACGGAGGGGCGGTGACGCTGTATCAGGACGCGCACGTGCCAGAGGCAATGTTGCCGGAGGTTGAGTTAGAGGAGGGTGTGATGTTTGAGCATGGGAAGTGCTGGGAAGATATATGCCACGCTATTTTGGAAGCGCACCATTTGGTTTATGTTGTGGGTTGGTCCATCTACCATAAGGTTAGGCTCGTGAGAGAGCCTACCAAACCCTTACCGAGCGGTGGTAGTTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCCCAAGAAGGTTTGCGAGTTTTACTTTTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTTTCATTAACACGGTTGTTGGAACGCTCTTTACGCATCATCAGAAATGTGTGATTGTGGATACTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGACTTTTCCGCGATAAGGACACTGTTTATCAGGACGATTATCATAATCCCACTTTTTGCGCGGGAACCAAAGGTCCAAGGCAACCATGGCATGACTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGTTGGAGAAAGGCCACGAGATGGTCTGAGTTGGGTCGAAAGCTCAAAAGAGTGTCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATTCTAACCGATGATCCTGAACTCTGGGTTTCGAAGGAAGAAGATCCTAAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTATTTGAAGCTGAGTCCCAGAACCTTGTGTGTGCGAAAAATCTGGTTATAGACAAGAGTATTCAAACAGCGTATATACATGCTATCAGATCTGCTCAACATTTTATTTATATCGAGAACCAATATTTTGTCGGATCATCCTTTGCTTGGCCAGCTTACAAAGATGCAGGCGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTTAGTAAGATACGATCCAAGGAGAGATTTACAGTGTATATAGTCATCCCAATGTGGCCCGAAGGTAACCCTACTTCTGCTTCTGTGCAAGAGATACTCTTTTGGCAGGCACAAACTATGCAAATGATGTATGATGTCATAGCTCGGGAATTAAAAGTTATGGAACTTGACCATCATCCACAAGATTATCTCAACTTTTATTGTCTTGGAAATCGAGAGCCGTTTTCTCGGTTTCCAAGTCCAAGTAGTTCGTCTCCGGATAATGGCGAAACGATTTCAGCCTCACAAAAGTTCCGAAGGTTCATGATTTATGTACATGCCAAGGGAATGATTGTGGATGACGAATATGTAATTCTTGGGTCTGCCAATATCAATCAACGATCCATGGCTGGATCAAGAGACACTGAGATAGCAATGGGTGCGTATCAACCCCATCATACATGGGGTAAGAAAAAGGGGCATCCACATGGTCAGGTATATGGGTATAGGATGTCTTTATGGGCAGAACACATAGGGAGCATACAAGCTTGCTTTAAGAATCCTGAAAGTCTTGAATGCGTGAGAACTATGAACAGTATTGCTGAAGAAAACTGGAGGAGGTACACATCTGACGATTATAGTCCATTGGAAGGGCACCTGATAAAATATCCTGTGATTATAAATGCCACTGGGAAGATAAAGTCCATACCTGGATTTGAGTCTTTCCCAGATGTTGGAGGCAAGGTGCTTGGCTCCAGATCCAACCTTCCTGATGCTCTAACCACATAG 2424 0.4781 MPQKHNTVVYLHGTLDLVIVEARCLPNMDLLSERVRRFFSALNTCSASISGKRKLHRARPRHHKIITSDPYVTVCLAGATVARTRVISNSQSPSWDEHFKIPLAHPAAQVDFFVKDNDMFGADLIGVVTVSAERILSGEPISDWFPIIGSFGKQPKPDCALRLAMKFTRCENTRMFRSVKEPDPDRFVVRDSYFPVRHGGAVTLYQDAHVPEAMLPEVELEEGVMFEHGKCWEDICHAILEAHHLVYVVGWSIYHKVRLVREPTKPLPSGGSLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDKDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATRWSELGRKLKRVSHWNDDSLIKLERISWILSPSESILTDDPELWVSKEEDPKNWHVQVFRSIDSGSLKGFPKDVFEAESQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPAYKDAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGNPTSASVQEILFWQAQTMQMMYDVIARELKVMELDHHPQDYLNFYCLGNREPFSRFPSPSSSSPDNGETISASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKKGHPHGQVYGYRMSLWAEHIGSIQACFKNPESLECVRTMNSIAEENWRRYTSDDYSPLEGHLIKYPVIINATGKIKSIPGFESFPDVGGKVLGSRSNLPDALTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03528 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Vimu10g03528 807 Pfam Phospholipase D C terminal 728 797 IPR024632 -
Vimu10g03528 807 CDD C2_plant_PLD 8 168 - -
Vimu10g03528 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Vimu10g03528 807 PIRSF PLD_plant 1 308 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu10g03528 807 PIRSF PLD_plant 301 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu10g03528 807 PANTHER PHOSPHOLIPASE D 304 797 IPR015679 -
Vimu10g03528 807 Gene3D Endonuclease Chain A 478 699 - -
Vimu10g03528 807 Pfam Phospholipase D Active site motif 312 346 IPR001736 GO:0003824
Vimu10g03528 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Vimu10g03528 807 Pfam C2 domain 13 147 IPR000008 -
Vimu10g03528 807 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Vimu10g03528 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 311 346 IPR001736 GO:0003824
Vimu10g03528 807 FunFam Phospholipase D 470 699 - -
Vimu10g03528 807 SUPERFAMILY Phospholipase D/nuclease 178 416 - -
Vimu10g03528 807 SMART pld_4 311 346 IPR001736 GO:0003824
Vimu10g03528 807 SMART pld_4 653 680 IPR001736 GO:0003824
Vimu10g03528 807 Gene3D C2 domain 11 179 IPR035892 -
Vimu10g03528 807 SUPERFAMILY Phospholipase D/nuclease 500 738 - -
Vimu10g03528 807 SMART C2_3c 14 144 IPR000008 -
Vimu10g03528 807 Gene3D Endonuclease Chain A 225 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03528 Vimu-Chr10 44878698 44888497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03528 8 806 Phospholipase D Gene Family (Wang group) AT2G42010 49.712 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03528 K01115 - gmx:100795859 1466.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03528 10 44878698 44888497 Vimu10g03528 10 44878698 44888497 ECH