Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03518 ATGATTGATTCGGTTCTTCTCGCGCTTTTCCTGCCCTGCCTCGGTATGAGTGCGGTTTTCATCGTTTACATGTGCCTTCTATGGTACGCCACCACCCGCCACCACCCCTCTGGCAACGGCTTACCGGTGAAGCAGGTCGCTGAGAAAGGTCTCTCTTCCCTAGAGTTAGAGAAGCTTCCTAAAATTACCGGCAAAGAACTGGTCTTGGGCACTGAATGCGCCGTCTGCCTCGACGAAATCGAAGGCGAGCAACCGGCCAGACTGGTTCCTGGTTGCAACCATGGCTTCCATGTCCATTGCGCTGATACCTGGCTCTCCAACCACCCACTTTGTCCTGTATGTAGGACGAAACTCGATCCTCAAATTTTCAGTTCCAATATTCCCTGA 387 0.5245 MIDSVLLALFLPCLGMSAVFIVYMCLLWYATTRHHPSGNGLPVKQVAEKGLSSLELEKLPKITGKELVLGTECAVCLDEIEGEQPARLVPGCNHGFHVHCADTWLSNHPLCPVCRTKLDPQIFSSNIP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03518 128 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Vimu10g03518 128 SUPERFAMILY RING/U-box 72 121 - -
Vimu10g03518 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 121 IPR013083 -
Vimu10g03518 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 121 - -
Vimu10g03518 128 Pfam Ring finger domain 72 115 IPR001841 -
Vimu10g03518 128 SMART ring_2 73 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03518 Vimu-Chr10 44802878 44804425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03518 1 126 C3H Transcription Factor Family AT5G42200 57.692 6.26e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03518 K19037 - gmx:100776003 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03518 10 44802878 44804425 Vimu10g03518 10 44802878 44804425 ECH