Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03511 ATGGTGTGGGTCCCCTTGTCGACCCCAAATGTGGCAATAGCCTTCTCATTACCAAACTCGGTAAAAAGAGAAACAAAGGGTTTGGGAAGGATGGCCTCACCGCCATCCAAACCTCCACACATTTTTTTTTCTGTGAGAGAGAAAGCGATGGCATCATCATCTCCGTGTGACTATTGGCCCCATCTTTCTCACTCTCTTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTTCTTCCTCACTCTCTCAAACACTCCTTCCTCCTCCTCCTCCTCCTCCTTCCTCCGTTGAACATGTCTGGAACGACCTCAAACTCTCCTCCCTCTCCAACTCCCCCGTTGACTTCAACCACTCCTCTTCTCATTCTTCTCTCCTCTCTCTCTCTCCCTCTCACAACCTTCTCTCTCTCTCCAACGCTTCCTTCCATTCCAACCACACCGCACGCCACCAAGATCAACACCATAATCGCATCATGAAGAATCGAGAATCCGCAGTTCGCTCCAGAGCCAGAAAACAGGCTTATAGAAAAGGTTTGGAAGATGAAATTGCTCGGTTGACGGAAGAGAATTCGAGACTGAGAAAAGAATTGAAAGAGAGAATAGCCCTCCGAGAACCAGTGCTCCCTGTAGAACCACGTCGTCTCCATTCTGAGAACAAAACCTGTGTGCTCAGTCTTCATGTTTTGAGATTGTAA 690 0.4783 MVWVPLSTPNVAIAFSLPNSVKRETKGLGRMASPPSKPPHIFFSVREKAMASSSPCDYWPHLSHSLSSSSSSPSPSSSSLSQTLLPPPPPPPSSVEHVWNDLKLSSLSNSPVDFNHSSSHSSLLSLSPSHNLLSLSNASFHSNHTARHQDQHHNRIMKNRESAVRSRARKQAYRKGLEDEIARLTEENSRLRKELKERIALREPVLPVEPRRLHSENKTCVLSLHVLRL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03511 229 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 115 197 IPR043452 GO:0003700|GO:0045893
Vimu10g03511 229 SMART brlzneu 145 219 IPR004827 GO:0003700|GO:0006355
Vimu10g03511 229 MobiDBLite consensus disorder prediction 67 97 - -
Vimu10g03511 229 CDD bZIP_plant_BZIP46 153 197 - -
Vimu10g03511 229 MobiDBLite consensus disorder prediction 143 175 - -
Vimu10g03511 229 Pfam bZIP transcription factor 151 197 IPR004827 GO:0003700|GO:0006355
Vimu10g03511 229 Gene3D - 150 202 - -
Vimu10g03511 229 SUPERFAMILY Leucine zipper domain 154 197 IPR046347 GO:0003700|GO:0006355
Vimu10g03511 229 Coils Coil 167 201 - -
Vimu10g03511 229 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 155 169 IPR004827 GO:0003700|GO:0006355
Vimu10g03511 229 MobiDBLite consensus disorder prediction 67 81 - -
Vimu10g03511 229 MobiDBLite consensus disorder prediction 145 175 - -
Vimu10g03511 229 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 197 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03511 Vimu-Chr10 44749755 44751893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03511 150 212 bZIP Transcription Factor Family AT3G56850 52.381 2.13e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g03511 bZIP_1 1.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03511 K14432 - vra:106761574 224.172