Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03506 ATGGATTCTTCTTTAATTCCTTCTTCACTTATGCTCCGTCTCATGTTACTGTTCTTCATCATCCTCTTTTGCAAAACCAAAGGAGCATTGCAACTTCCACCAAATTTTAACGTTCCTGCAGTCTTGGTGTTCGGAGATTCGATAATGGACACCGGCAACAACAACAATAACACGCAAACGCTTGCAAAGTGCAATTTCCCTCCCTATGGTAGAGACTTCCGAGGAGCCATTCCGACGGGTCGATTCGGTAACGGAAAAGTTCCTTCCGATCTTGTAGCTGAAGAACTAGGAATTAAGGATCTTCTACCGGCATATTTCGATCCAAATCTCCAACCTAATGATCTCCTCACTGGTGTCTGTTTTGCATCTGGTGGTTCAGGCTACGATCCTCTCACAGCTAAAATGGCGACAGCTATATCATTGTCTGGTCAAATAGACATGTTCAAAGACTACATAAGAAAGCTTGAAGGACTTGTCGGGGAGGAGCGAACCAACTTCATCCTAGCCAATAGCATTGTCCTTGTGGTGGAAGGCAGCAACGACATTTCCAACACTTACTTTCTGAGTCATGCTAGAGAAGTGCAATATGATATTCCTACTTACACTGACCTAATGGTTAGCTCAGCTTCTAGTTTCTTAAAGAGAACAATTTTGGGAGGATTGCTAAGAAAATGTGCAGAAAAGTATAACGAGGCGGCTAAGTTATTCAACGGCAAACTGGCAAAGGAGTTGGCTTCTCTTAACCAGAATTTGCCTAATGCCAGGGTGGTTTACCTTGATGTTTACAACCCTCTACTTGATATCATTGTAAATTACCAAAATTATGGTTTTAAAGTGGGAGACAGAGGATGTTGTGGTACGGGCAAAATAGAGACTGCTGTGTTCTGCAACTCTTTGGACCCCACGTGTCAGAATGCGGGAGACTACGTTTTTTGGGATGTTGAAGAACTGGGTATCAAGAAGCTTTTACCAGCTTATTTGGATCCAAATCTCAAGCCAGACGACCTTCTCACCGGAGTGTGCTTTGCTTCCGGCGCTTCCGGATACGATCCTTTAACGCCAAAAATAGCGTCGGTGATATCAATGTCCGAACAACTAGAAATGTTCAAGGAATACGTAGAGAAGCTGAAACAAATTGTAGGAGTGGATAGAACCAACTTCATCTTAGCAAACAGTTTTTTCCTTGTGGTAGCTGGAAGTGATGACATTGCAAACACGTATTTCGTCGCTCGCGCTCGTCAATTGCAGTATGATATTCCTGCTTACACTGATCTCATGAGCAATTCCGCTTCTGATTTCGTGAAGGAATTATATGGACTCGGAGCACGAAGAATCGGAGTACTGAGTGCACCACCGATCGGTTGCGTTCCGTCGCAAAGAACACTTGCCGGAGGCTTAGAAAGAGAGTGCGCAGGGGACTACAATTACGCGGCGAAGTTATTTAACTCTAAACTCTCAAGCAAACTTGATTCTCTGAGTGACTTGCCAGATAGTAGGATCGTTTACATTGACGTTTACAACCCCCTAATGGATATCATTGTCAACTACAAAAGCTATGGCTATGAAGTTATGGACAAAGGCTGCTGTGGCACAGGGAAATTGGAGGTTGCTGTTCTCTGCAACCGTTTGGATGCAACTTGTTCCGATGCTTCCAAATACGTGTTTTGGGATAGTTATCATCCTACTGAAAAAGTATACAAACAGCTCGTAGCCCAAATCCTTCAAAACTATTTAACTCGTTTCTTCTGA 1749 0.434 MDSSLIPSSLMLRLMLLFFIILFCKTKGALQLPPNFNVPAVLVFGDSIMDTGNNNNNTQTLAKCNFPPYGRDFRGAIPTGRFGNGKVPSDLVAEELGIKDLLPAYFDPNLQPNDLLTGVCFASGGSGYDPLTAKMATAISLSGQIDMFKDYIRKLEGLVGEERTNFILANSIVLVVEGSNDISNTYFLSHAREVQYDIPTYTDLMVSSASSFLKRTILGGLLRKCAEKYNEAAKLFNGKLAKELASLNQNLPNARVVYLDVYNPLLDIIVNYQNYGFKVGDRGCCGTGKIETAVFCNSLDPTCQNAGDYVFWDVEELGIKKLLPAYLDPNLKPDDLLTGVCFASGASGYDPLTPKIASVISMSEQLEMFKEYVEKLKQIVGVDRTNFILANSFFLVVAGSDDIANTYFVARARQLQYDIPAYTDLMSNSASDFVKELYGLGARRIGVLSAPPIGCVPSQRTLAGGLERECAGDYNYAAKLFNSKLSSKLDSLSDLPDSRIVYIDVYNPLMDIIVNYKSYGYEVMDKGCCGTGKLEVAVLCNRLDATCSDASKYVFWDSYHPTEKVYKQLVAQILQNYLTRFF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03506 582 FunFam GDSL esterase/lipase APG 314 578 - -
Vimu10g03506 582 Gene3D SGNH hydrolase 315 578 IPR036514 -
Vimu10g03506 582 Gene3D SGNH hydrolase 33 314 IPR036514 -
Vimu10g03506 582 PANTHER GDSL ESTERASE/LIPASE EXL3 315 572 - -
Vimu10g03506 582 CDD SGNH_plant_lipase_like 295 577 IPR035669 -
Vimu10g03506 582 CDD SGNH_plant_lipase_like 39 313 IPR035669 -
Vimu10g03506 582 Pfam GDSL-like Lipase/Acylhydrolase 41 313 IPR001087 GO:0016788
Vimu10g03506 582 Pfam GDSL-like Lipase/Acylhydrolase 330 570 IPR001087 GO:0016788
Vimu10g03506 582 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629|GO:0016298
Vimu10g03506 582 FunFam GDSL esterase/lipase APG 30 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03506 Vimu-Chr10 44689924 44706501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03506 310 576 Pollen Coat Proteome AT1G75910 38.095 4.32e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03506 - - gmx:100793604 512.686