Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03480 ATGTTTACCATACCTATGCAGCCGAGTCAAAGATATGAAAGTAGTCACAGAAGTAATCTCGAAGTGGCTTCTGACAGGAGTAAAACAGTTTATCTTCCCCGTCCAGTTCAAACCCAGTCTACGGAAAGAGTAAAGCAAAATGGTAAATCTAGAAACACAAAATCTGGGACTCACAGACTTAGTGCCGATTCCCCTAATTCAACTGTGGGTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACCGCTGAGATCTTAGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATTAACAGTCTAAAGGCTGAGGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTACGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGTGGAATCAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGACCCATCATGGAACAGTGAGCAATGCAGAAAGAGAGGTGTGGGATTATCAGAAAGCCACGACGATGAAAAAAATACTTCTGAAAGTTTCAATTTTCATGGATCACATGCAACTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTTTGGGAAAATGAACCAATTATTCCTATAGAGGAGCTTCAAGACTATTAA 1068 0.4026 MFTIPMQPSQRYESSHRSNLEVASDRSKTVYLPRPVQTQSTERVKQNGKSRNTKSGTHRLSADSPNSTVGNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINSLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEVESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCRKRGVGLSESHDDEKNTSESFNFHGSHATGIQEITPTDFEMEDDYWFQSDPGVRLTQLWENEPIIPIEELQDY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03480 355 MobiDBLite consensus disorder prediction 1 69 - -
Vimu10g03480 355 Gene3D - 146 258 - -
Vimu10g03480 355 PANTHER TRANSCRIPTION FACTOR E2F 21 346 IPR015633 GO:0000978|GO:0006357
Vimu10g03480 355 MobiDBLite consensus disorder prediction 1 17 - -
Vimu10g03480 355 Pfam E2F transcription factor CC-MB domain 155 255 IPR032198 GO:0046983
Vimu10g03480 355 SMART E2F_TDP_2 74 139 IPR003316 GO:0005667|GO:0006355
Vimu10g03480 355 SUPERFAMILY E2F-DP heterodimerization region 151 258 IPR037241 -
Vimu10g03480 355 FunFam E2F transcription factor 1 68 141 - -
Vimu10g03480 355 SUPERFAMILY "Winged helix" DNA-binding domain 74 137 IPR036390 -
Vimu10g03480 355 Gene3D - 69 141 IPR036388 -
Vimu10g03480 355 Pfam E2F/DP family winged-helix DNA-binding domain 76 139 IPR003316 GO:0005667|GO:0006355
Vimu10g03480 355 Coils Coil 169 189 - -
Vimu10g03480 355 MobiDBLite consensus disorder prediction 31 69 - -
Vimu10g03480 355 CDD E2F_DD 150 258 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03480 Vimu-Chr10 44532093 44535239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03480 39 343 E2F-DP Transcription Factor Family AT1G47870 50.000 1.12e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu10g03480 E2F_CC-MB 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03480 K06620 - gmx:100797301 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03480 10 44532093 44535239 Vimu10g03480 10 44532093 44535239 ECH