Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03468 ATGGGATGGCCAAGTCATAGTGATATTTTATCGAGATGTACTGCTGTTGCAATCAGAGGAAAAGGTGACAGGTTTTTGGTTGGCCAGCCTATGAACTCAGATAACACCTTTCAGAGGATCATAATCTGGTTTCACCCCAAGTATCAGTCTGTGCACATTGAACATGGAAAGAAGGCCAGACTCACTTGTGGGCAGACATTTTTGTGTGGTGGGGTATTCTGGATGCAGTTATTCCTTGAGTCTACAGTTAGGCTATTCTTATCAGAAGAATCCCCTTCGCAGGTTGGATTAAATTCTCAAGATCACCTCCAAGCTAAGGCATCATTGCAGCTGTCTGCAGGTGGACCAGGTTCCGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATACTTCAAGTCAGTTTGAGATTAAGCCATCTCAAATACCAGTTATCAAGTGGATTACTCCTCCAAAGATTGCGCTAAATCTCACATGGCAAGTAGTGTGTGGGGAAGAAAGCAAAGAGGTAGAGGATCAACGTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCACATCATCCATTCCTCCAAACCCTTCTGTTTCAGTGGATGTTGAAGATTCAAATTACATGGATGTTCAACCTGCACTGATACCAATAACGGCACTTGAAGATGACGATGCAGCAACAGATACATTATCGGATTCCTTGGAACCAGTTGATGCTTCACAATGTCTTGAATTACCTCCCGGTATGTTGAAGAATTCAAACTCTGCCACAAGTACGCAATTTTCTCGTGGTCTGACATCTGATGTATCTGCTGCATCTGTTGCTTTAACTAACATTGTGAGGAGCAACGAACATGGGAAATTGATTGACCATGAATTACTTAATAATATTCTCAGCAATCCAGAAGTGATTGAGAAATTGGTTAGAGATTATGGAGCTACTAATAATTCTCAATATGTACATAATGTGGGGTCGTCCTGTGCGGTTTTTTCAAATCCTCCTATTCCTGTTAATCAAGGAGAAACCGCTACACCTTCATCGATTGCTTTTTCAGCCACTTCTTCCTATACACCATCTACCGGAGGTCAGGTGGCACCTGTTTCTACCCAATGGCTTCCTAGGCCTGCAACCAGTTCAGCTATTGTTTCTTCTCCTGTTGAGGTTCCTGCAACGAAAGATGTTAACTACTATAAGAGTTTAATTCAGCAACATGGAGGAGATAAACAAGAAACACTACCATATTCCAGTAAACGTCAGATTCATCAGCCAGTAACAAGTTATGAGCCAACATACAATCAAAGAGCTAAAGTGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGGAATGGAGCCAACTGTGCCTACCAGCATGACGCGTCATTTCAGCCACGAGGTAATACCGTGGCGGGGATACAAAGTTCAAAGAGGATGAAAATGGATCATGAGATTAGCAGTTAA 1479 0.4233 MGWPSHSDILSRCTAVAIRGKGDRFLVGQPMNSDNTFQRIIIWFHPKYQSVHIEHGKKARLTCGQTFLCGGVFWMQLFLESTVRLFLSEESPSQVGLNSQDHLQAKASLQLSAGGPGSDDILPPGFEGTHTSSQFEIKPSQIPVIKWITPPKIALNLTWQVVCGEESKEVEDQRQREMRVLEAIYPRTSSIPPNPSVSVDVEDSNYMDVQPALIPITALEDDDAATDTLSDSLEPVDASQCLELPPGMLKNSNSATSTQFSRGLTSDVSAASVALTNIVRSNEHGKLIDHELLNNILSNPEVIEKLVRDYGATNNSQYVHNVGSSCAVFSNPPIPVNQGETATPSSIAFSATSSYTPSTGGQVAPVSTQWLPRPATSSAIVSSPVEVPATKDVNYYKSLIQQHGGDKQETLPYSSKRQIHQPVTSYEPTYNQRAKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVAGIQSSKRMKMDHEISS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03468 492 ProSiteProfiles Zinc finger C3H1-type profile. 439 467 IPR000571 GO:0046872
Vimu10g03468 492 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 337 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03468 Vimu-Chr10 44442357 44444874 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu10g03468 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03468 - - gmx:100783321 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03468 10 44442357 44444874 Vimu10g03468 10 44442357 44444874 ECH