LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g03465	ATGGGCAAATCTACCTCCTGCTTCAAGCTAATCACTTGCGGTGGCGATGCGGCCGATAAGGACGACTACCACCAAATCTCCGAGCTCATTGCATTGCCAATGCATGGGAACGATCCAGAAACTATCAAGGAGTCTAATGATAAACGTGGTTGGAGTTTTCGCAAGAAATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAGCAGAGGCTCCATCTTCGACAAATAAGGAAAGTGCAGAATGTACTAATTTTAATTTTCAACCACTTTCTGAACCTAATGTTGTTGAGAAGGTTTACACAACAAATTGCTCTGATGAGAAGCCCCAGTTATCCTCTTTTGAAAACTCACAAGTAGTTGAAACAAATGTGATTGAAACTGAGAGGAAGGTGGATGTGAATCCACCAGAGTCTGATGTCGTCGTCATCCAGGCAGCTATTAGGGGGTTATTGGCTCAGAGGGAACTGCTACAGCGTAAGAAAGTAGTGAAGTTGCAAGCTGCCATTCGTGGGCACTTGGTCCGGAGGCATGCTCTAGGAACCCTGCGTTGTGTTCAATCCATAATCAAAATGCAGGTCCTTGTGCGAACTCGTCGTGCTCAGCAGTCACATCTGGAAAATCATTTAATTCGCAAGGATGGCAAAAAGGATTCCTCAGAAATTTTGGGAAATGAAAATCTGGTGACCAAATCTAATGTGAATTACACTTCCATTGAGAAGCTGCTTAGCAATAGGTTTGCAAGTCAGCTGTTGGAATCAACACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCCGATTCTGCTTGGAAATGGTTGGAAAGATGGATGTCCATATCATCAAAAGATATTGCAGATCGCAATGAAACTAGTTCTCTAACAGAACATTCAAAAGAAAGCAAGGATAGCGCTCCTGTGTTTCAATTTGAAACGGGTATTCCATCTGAACCCTTTCACCCTGCCACTGACTCAATACCCACTGTTGAGGATTCACCTCTGCCATCTGAGGATGAAGAAAAGTCAATTACTTATGACGCTAATAACTTTGAGTTTCAAGCAAGCTGCTCCGCACCATCTATTGTAAAAGATGACTTGGAACAGGTTCCTGCTGAAGAAAAAACTGCATATGATGCCAAAGTTACCTTAGTTGATACCAATTCCTTCCAAACTGACAATTCAGCATCAGATGCAAGTGCCCCATCAGAGCTTTACTCTCTTCACAAGGGACCTGAAATTGCCCCATCATCAGAACATAGTTCTGTTCATGGGGAGCCTGAAATTACCCCACCACCAGAGCATACTTCTTTTTATCAGAAGCCTGAAATTGACAGTGAGCAGAACAAACGATCTGTGAAAAGATTTGCTTCAGAACAACTAGAGTCTGAAGGAAAGAAAACTGTGAATGGATCAAAAAAGATCAGTAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATAGCAAATTCAGGCAGGACAAGCAATTTGTCCTACCAAGATTCAGCAGTTGAATCACAAGGAGACACCTCTTCTGTTGGCAATGACAGTGCATATAAATCGAAAGAGTTTGCATTTGAAAATCCTGCTCTTTATCTTTCTAGGCTTGCTGGTTCTGATTGTGGCACTGAACTCTCCATTTCTTCAACACTTGATTCACCTGACATATCAGAGCCTGGTGTAGTGGAAAATGAACGAGATGCCAAAGATTTGGTGGAAGGGATTGGTAATCTTGAGAACACAATAAACCGTGATGATGAGGCCAATGTTTCATCTGCCATCCCAGCTTCTAATGTAGCTACTTCTGTTTTGGATCAGTCGGAGGTTGTTGATGACATCAGTGGCAATTTGGGTCCCTCTGTGGTGGCTGTGGACTCTGGAGAGCCTGCTATTAGTAATATTGAGAAAAATGCATCTGATCTGCAGAGAGAGCCAGCAGAGGCTGGTTTGCAAGATTTAAGATCATCTCCAGAAGCATCACCTAGAAGTCATTTGACTGTTCCCGAATCACAAGGAACCCCTTCAAGCCAAGTGTCTGTGCAACCTAAAGAGAGCAAAGCCAACAAGAATAGATCTGGCAATAAACGTCGGAGCCTACCCTTAAGTAACAAGTCTCCTTCTACTCCAAATCAAGATTCGGGATCAAGAGGCAGTAGGGAGCAACTACCTAAAGATCAGCAGAATGGAAAGAGGCGCACTTCCTTTGGCTCAGTAAAGCCTGATCACATTGAACAAGAACCTAGAGATAATAATACTAACAACAATTCTATTCCCCATTTCATGCAAGCTACAGAATCTGCTAAGGCCAAGATTAATGCAAATAACTCGCCAAGATCAAGCCCGGATGTGCATGAACGGGACGTTGAAGTTAAGAAGAGGCTTTCCTTACCTGGTGCCGCTGGTAGACAAGGATCTCCACGTATCCAGCGATCAACATCTAAGGCACAGCAGACTGCCCAAGGGAACAATGTAAATCCTCCTCAAGGTAAACTTTAG	2514	0.4316	MGKSTSCFKLITCGGDAADKDDYHQISELIALPMHGNDPETIKESNDKRGWSFRKKSARHRVLSNTVIAEAPSSTNKESAECTNFNFQPLSEPNVVEKVYTTNCSDEKPQLSSFENSQVVETNVIETERKVDVNPPESDVVVIQAAIRGLLAQRELLQRKKVVKLQAAIRGHLVRRHALGTLRCVQSIIKMQVLVRTRRAQQSHLENHLIRKDGKKDSSEILGNENLVTKSNVNYTSIEKLLSNRFASQLLESTPKNKPIHVKCDPSKADSAWKWLERWMSISSKDIADRNETSSLTEHSKESKDSAPVFQFETGIPSEPFHPATDSIPTVEDSPLPSEDEEKSITYDANNFEFQASCSAPSIVKDDLEQVPAEEKTAYDAKVTLVDTNSFQTDNSASDASAPSELYSLHKGPEIAPSSEHSSVHGEPEITPPPEHTSFYQKPEIDSEQNKRSVKRFASEQLESEGKKTVNGSKKISNPAFIAAQSKFEELSSIANSGRTSNLSYQDSAVESQGDTSSVGNDSAYKSKEFAFENPALYLSRLAGSDCGTELSISSTLDSPDISEPGVVENERDAKDLVEGIGNLENTINRDDEANVSSAIPASNVATSVLDQSEVVDDISGNLGPSVVAVDSGEPAISNIEKNASDLQREPAEAGLQDLRSSPEASPRSHLTVPESQGTPSSQVSVQPKESKANKNRSGNKRRSLPLSNKSPSTPNQDSGSRGSREQLPKDQQNGKRRTSFGSVKPDHIEQEPRDNNTNNNSIPHFMQATESAKAKINANNSPRSSPDVHERDVEVKKRLSLPGAAGRQGSPRIQRSTSKAQQTAQGNNVNPPQGKL	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g03465	837	ProSiteProfiles	IQ motif profile.	137	164	IPR000048	GO:0005515
	Vimu10g03465	837	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	139	206	IPR027417	-
	Vimu10g03465	837	Gene3D	-	138	177	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	755	785	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	700	740	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	441	470	-	-
	Vimu10g03465	837	Pfam	Protein of unknown function (DUF4005)	756	822	IPR025064	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	319	342	-	-
	Vimu10g03465	837	SMART	iq_5	158	179	IPR000048	GO:0005515
	Vimu10g03465	837	SMART	iq_5	135	157	IPR000048	GO:0005515
	Vimu10g03465	837	PANTHER	IQ-DOMAIN 5-RELATED	1	810	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	662	693	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	811	837	-	-
	Vimu10g03465	837	ProSiteProfiles	IQ motif profile.	158	187	IPR000048	GO:0005515
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	410	473	-	-
	Vimu10g03465	837	Pfam	IQ calmodulin-binding motif	159	177	IPR000048	GO:0005515
	Vimu10g03465	837	Pfam	IQ calmodulin-binding motif	140	156	IPR000048	GO:0005515
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	618	837	-	-
	Vimu10g03465	837	MobiDBLite	consensus disorder prediction	498	522	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g03465	126	823	IQD Protein Family	AT1G19870	35.461	1.28e-100	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g03465	-		-	var:108343123	1566.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g03465	10	44431409	44436145	Vimu10g03465	10	44431409	44436145	ECH