Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03463 ATGAATGCAGGATTTCTGGCATACTGTTGTTTGATCAAGCAGTTATTGCAACCGGTTGTGTTTCTGATGGATGATGCTGGGCATCGTGAAAATGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGATAATGCAATTGCAACCCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGCCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTACAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAAAATGGTCAAGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCCTGTACCGGTGTCCTGAAGCAGTGTTATAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTCGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTTAGTCGCCTTGCCGCAGAAGAAACAGCTTTTAGTGATCAATTATGGATTATCGAGTCGAGCAAGGGAAATAATGTCAAGTGTAAAGGTTATCTGGGAAAGCTTAATGGTTACAGTATGCCCGTACCTATATTTAGAATGCGTAATGGTGCTAGATGTTGGCTAAATGAAGAAGGGGTTGAAGAAATGACGAAGTAA 1176 0.4575 MNAGFLAYCCLIKQLLQPVVFLMDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPTAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEETAFSDQLWIIESSKGNNVKCKGYLGKLNGYSMPVPIFRMRNGARCWLNEEGVEEMTK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03463 391 MobiDBLite consensus disorder prediction 151 173 - -
Vimu10g03463 391 MobiDBLite consensus disorder prediction 145 210 - -
Vimu10g03463 391 Coils Coil 80 107 - -
Vimu10g03463 391 MobiDBLite consensus disorder prediction 180 196 - -
Vimu10g03463 391 SMART GAGA_bind_2 23 333 IPR010409 -
Vimu10g03463 391 Pfam GAGA binding protein-like family 23 340 IPR010409 -
Vimu10g03463 391 PANTHER - 23 340 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03463 Vimu-Chr10 44412456 44413939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03463 87 333 BBR or BPC Transcription factor family AT5G42520 63.118 1.68e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vimu10g03463 GAGA_bind 2.1e-90 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03463 - - gmx:100783502 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03463 10 44412456 44413939 Vimu10g03463 10 44412456 44413939 ECH