Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03458 ATGGCAACAACGGTTATATTTTTCACCCTCAGACTGGTCGCTTTCTTCGCCATCCTAACCATAACCACAACCGCTGCTGCGCAGAACACCACTGCTTTGGAGATTCAAGCCTTAACAGCATTCAAGCGCAACCTCCATGACCCTCTGGGTTCCCTCGACGGTTGGGACCCTTCCACGCCCTCCGCACCCTGCGACTGGCGTGGCATTGTCTGTCTCAACAACCGAGTTCATCACCTCCGTCTTCCCCGTCTCCAGCTCGCCGGTGAACTCTCTCCCTCCCTTTCCAGCCTCCTCCAACTCCGTAAACTCAGCCTCCACTCCAACAATCTCAACTCCTCCATCCCTCCCTCCCTCTCTCAATGCCTCTTCCTACGCGCTGTTTACCTCCACAACAACCGCCTCTCCGGTCACCTTCCTCGACAGCTTCTCAACCTCACTAACCTCCAAATTCTTAACCTTGCGCGCAATCTATTCACCGGAGAAATCCCAGACCAACTTTCCGTCTCCCTACGTTTTTTAGACCTATCTGATAATGCCTTCTCCGGCAATATTCCAGCTAATTTCTCATCCAAATCTCAGCTTCAACTCATGAATCTCTCTTACAACAGGTTGAGTGGAGGAATTCCTGGTTCACTGGGAAAGTTGCAAAATTTGCAATATCTTTGGTTAGATTCTAACCATATTCATGGAACTTTTCCGTCTGCCCTTGCCAACTGTTCCTCTCTGGTACACCTTAGTGCAGAAGACAATGTTCTGACCGGACTTCTTCCTCTTACCTTAGTAACCATACCAAAACTTCAGGTACTTTCACTCTCAAGGAACCAACTTTCCGGTTTGGTTCCCAAGTCCGTTTTCTGCAACACTCACCTACAAAGCTTGAATCTTGGTTTCAATTCCTTTACGGGTTTTTCTGCACCTCAAAGTGAAGAATGCAATAGTATTTTAGAAATTTTGGATGTTCAAGAAAATCACATTGCTCCCACAAGATTTCCCTCGTGGTTGACCCGGACTACGAAATCGTTGAAGGTGCTTCAGCTCTCGGGAAATTTCTTTACTGGTTCTCTCCCTGATGATATTGGTAACTTTTTAGCTTTGGAAGAGCTTAGAGTCGCGAATAATTTGTTATCCGGTGGTGTTCCGCCTAGCATTGTGAATTGTAGGTTGTTAAAGGTTTTTGATCTTGAGGGGAACCGTTTCTCTGGGTTAATTCCTGAATTTCTCGGGAATATGAGAAACCTGAAGGAGTTTTCTCTTGCAGGTAATCTTTTTACCGGTTCAATTCCTTCTAGTTTTGGAGCACTTTCTGCGCTCGAAACGCTTAATTTGAGTGACAATAAGTTGACCGGTGTGGTGCCTAAGGAGATCATGAAACTGGGGAACGTGACTGAATTAAATCTCAGCAGTAACGAGTTTTCGGGTCAACTTTGGTCAAATATTGGGGACATGACGGGTTTGCAAGTTCTTAATTTGAGTCGATGTGGGTTTTCAGGAAGGATTCCTGCTTCGTTGGGGAATTTAATGAGACTAACGGTTCTGGACTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCTCTTGAGGTTTTTGGGTTACCTAGTCTACAAGTTGTGGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATATGTCGGTGACATTCCATTAACTTACGGGTTCCTCAGTTCTTTAACGATTCTCTCTCTGTCTCACAATGGTGTTTCTGGTGAAATACCGCCCGAGATTGGTGGTTGTTCGCAACTTGAAGTATTGCAGCTGCAGTCAAATTTTCTAGAGGGTAACATTCCTGGTGACATCTCTCAGCTATCTCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAGATATCAGAGTGTTCTGCCTTGAGTTCACTCTTGTTGGATGGTAATCACTTCACGGGTCGCATTCCCGGTTCCTTGTCAAAACTGTCTAATTTGACCGTGTTGAACCTTTCTTCAAATCTTTTGAATGGGGAAATTCCCGTTGAACTGTCAAGCATTTCTGGTTTGGATTATTTAAACGTGTCTAGTAATAATCTTAAGGGTGAGATTCCATACGTGCTTGGTGTCAGATTCAATAATCCTTCCGTGTTTGCAATGAACCAAGGTTTGTGCGGGAAGCCCTTGCAGAGGGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGGAGTGGCTGGCTTGTGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTCGAGAAGGGGTGACGGGTGAGAAGAAACGGAGCCCCTCAACAAGTGCAGGTAGTAGAGGGAGCGGTGAAAACGGAGGACCAAAGCTAGTGATGTTCAATAACAAAATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGCCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGCTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAACTTGACAGTTCTTCGTGGTTACTATGCGGGTCCACCAGATGTGAGACTTCTCGTGTATGACTACATGCCCAATGGAAACCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTAAATTGGCCAATGCGTCACCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTGCCAATAGTTCATGGTGACGTGAAGCCTCAAAATGTTCTTTTCGATGCGGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTCGCAGCAGCGGCAGAAGCATCGTCGTCGTCGACTCCAGTAGGGACATTGGGGTATGTTTCAGCAGAAGCTGTATCGAGTGGGGTGGCGACAAAGGAGAGTGATGTTTATAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGATTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTCTGCACAGCAACGGATCCTCTTGATCGACCGTCAATGTCGGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTCGGACCGGAAATCCCGTCATCGGCCGATCCCACAACACTACCTTCTCCTGCTTGA 3390 0.469 MATTVIFFTLRLVAFFAILTITTTAAAQNTTALEIQALTAFKRNLHDPLGSLDGWDPSTPSAPCDWRGIVCLNNRVHHLRLPRLQLAGELSPSLSSLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPRQLLNLTNLQILNLARNLFTGEIPDQLSVSLRFLDLSDNAFSGNIPANFSSKSQLQLMNLSYNRLSGGIPGSLGKLQNLQYLWLDSNHIHGTFPSALANCSSLVHLSAEDNVLTGLLPLTLVTIPKLQVLSLSRNQLSGLVPKSVFCNTHLQSLNLGFNSFTGFSAPQSEECNSILEILDVQENHIAPTRFPSWLTRTTKSLKVLQLSGNFFTGSLPDDIGNFLALEELRVANNLLSGGVPPSIVNCRLLKVFDLEGNRFSGLIPEFLGNMRNLKEFSLAGNLFTGSIPSSFGALSALETLNLSDNKLTGVVPKEIMKLGNVTELNLSSNEFSGQLWSNIGDMTGLQVLNLSRCGFSGRIPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSSNEYVGDIPLTYGFLSSLTILSLSHNGVSGEIPPEIGGCSQLEVLQLQSNFLEGNIPGDISQLSHLKELNLGHNRLKGDIPDEISECSALSSLLLDGNHFTGRIPGSLSKLSNLTVLNLSSNLLNGEIPVELSSISGLDYLNVSSNNLKGEIPYVLGVRFNNPSVFAMNQGLCGKPLQRECAKVRRRKKRRLIMLIGVGVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEANFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSTPVGTLGYVSAEAVSSGVATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03458 1129 Gene3D Ribonuclease Inhibitor 459 747 IPR032675 -
Vimu10g03458 1129 ProSiteProfiles Protein kinase domain profile. 835 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03458 1129 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 315 1109 - -
Vimu10g03458 1129 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 457 748 - -
Vimu10g03458 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Vimu10g03458 1129 SUPERFAMILY L domain-like 457 717 - -
Vimu10g03458 1129 Pfam Leucine Rich Repeat 485 506 IPR001611 GO:0005515
Vimu10g03458 1129 Gene3D Phosphorylase Kinase; domain 1 810 910 - -
Vimu10g03458 1129 SUPERFAMILY L domain-like 34 325 - -
Vimu10g03458 1129 MobiDBLite consensus disorder prediction 792 814 - -
Vimu10g03458 1129 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Vimu10g03458 1129 Pfam Leucine rich repeat 604 663 IPR001611 GO:0005515
Vimu10g03458 1129 Pfam Leucine rich repeat 508 565 IPR001611 GO:0005515
Vimu10g03458 1129 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Vimu10g03458 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 303 - -
Vimu10g03458 1129 Pfam Leucine Rich repeat 287 301 IPR001611 GO:0005515
Vimu10g03458 1129 PRINTS Leucine-rich repeat signature 266 279 - -
Vimu10g03458 1129 PRINTS Leucine-rich repeat signature 434 447 - -
Vimu10g03458 1129 Pfam Protein tyrosine and serine/threonine kinase 838 1054 IPR001245 GO:0004672|GO:0006468
Vimu10g03458 1129 SMART LRR_typ_2 434 457 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 145 169 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 263 287 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 458 482 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 674 698 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 626 650 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 97 121 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 578 602 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 530 553 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 215 239 IPR003591 -
Vimu10g03458 1129 SMART LRR_typ_2 410 433 IPR003591 -
Vimu10g03458 1129 FunFam Putative LRR receptor-like serine/threonine-protein kinase 800 910 - -
Vimu10g03458 1129 Gene3D Transferase(Phosphotransferase) domain 1 911 1115 - -
Vimu10g03458 1129 Gene3D Ribonuclease Inhibitor 169 458 IPR032675 -
Vimu10g03458 1129 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Vimu10g03458 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Vimu10g03458 1129 FunFam Piriformospora indica-insensitive protein 2 355 449 - -
Vimu10g03458 1129 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 911 1115 - -
Vimu10g03458 1129 SUPERFAMILY L domain-like 288 473 - -
Vimu10g03458 1129 SUPERFAMILY Protein kinase-like (PK-like) 814 1118 IPR011009 -
Vimu10g03458 1129 Gene3D Ribonuclease Inhibitor 32 168 IPR032675 -
Vimu10g03458 1129 SMART serkin_6 835 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03458 1129 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03458 Vimu-Chr10 44365832 44369927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03458 1 1129 Receptor kinase-like Gene Family AT1G75640 63.605 0.0 1336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vimu10g03458 PK_Tyr_Ser-Thr 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03458 - - gmx:100801571 1824.29