Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03449 ATGCATCTCCCCCCACCTTCCCTTTGTATTTCTCTTTCCCTCATTAACTCATTATCCTATTATCACTCAGAATTCCCAGAAGAAGCAGATAGAAAGGAACAGAAGCATAAGCATAAGGAAGCAGAAGCAGAAGCAGATACAGCAACAGCAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTTGATCAATACCAGATGACCCTAGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAAGAGGTCAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGCCTGATCGATCTGAACATGGAAGATCTCAAGCTCCTGGAGGAAGAAATGGACAAGGCCGCCAAGATTGTTCGTGAGCGTAAGTATAAAGTGATAACAAACCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGCAGGAGGAGAGTACGAGTCTGTGATCGGGTTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAATGCTCATAGCGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 837 0.4528 MHLPPPSLCISLSLINSLSYYHSEFPEEADRKEQKHKHKEAEAEADTATAAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIENAGGEYESVIGFSNLGPRMFALSLQPSHPNAHSGPTSDLTTYPLLF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03449 278 Coils Coil 128 162 - -
Vimu10g03449 278 ProSiteProfiles K-box domain profile. 135 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g03449 278 SUPERFAMILY SRF-like 54 146 IPR036879 GO:0003677|GO:0046983
Vimu10g03449 278 ProSitePatterns MADS-box domain signature. 54 108 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 Coils Coil 202 222 - -
Vimu10g03449 278 MobiDBLite consensus disorder prediction 26 48 - -
Vimu10g03449 278 CDD MADS_MEF2_like 54 131 IPR033896 GO:0000977|GO:0045944
Vimu10g03449 278 MobiDBLite consensus disorder prediction 26 45 - -
Vimu10g03449 278 ProSiteProfiles MADS-box domain profile. 52 112 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 Gene3D - 64 132 IPR036879 GO:0003677|GO:0046983
Vimu10g03449 278 PRINTS MADS domain signature 89 110 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 Coils Coil 31 51 - -
Vimu10g03449 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 108 IPR002100 GO:0003677|GO:0046983
Vimu10g03449 278 Pfam K-box region 133 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g03449 278 PANTHER SERUM RESPONSE FACTOR HOMOLOG 54 217 - -
Vimu10g03449 278 SMART madsneu2 52 111 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03449 Vimu-Chr10 44300570 44304577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03449 52 277 MADS-box Gene Family AT3G54340 55.603 1.27e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu10g03449 K-box 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03449 K09264 - gmx:547720 404.445