Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03447 ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCAACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCTCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAGCTCGCTGCCTTGCAGAACCCACAACAATTTCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCTCAGATATAGATTTCAACCTTGTAACTTTTGGAACTAGTCTGCTACCGCTACTACACACAGATGATGATGATGATGATGATGCACTGAGATCTCGATGGTTAGAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTATTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAGACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCAGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACAGCTTGGTTTAATAACCGCCGCAGCTGCAGCCACAGCCACAACAGTCAGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCTTTGAATGCTTTCATGTCTGGTACACAATTCTTCCAACCCCCAAGGTCCTAA 1044 0.499 MAGFFSLGGTRRGGPQNKEEGEVEKGDNNINNNNGNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLAALQNPQQFRPENIPKRYHRDTQLVSAPQPISDIDFNLVTFGTSLLPLLHTDDDDDDDALRSRWLELGHFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTSAVTEGSSGGEPRQLGLITAAAAATATTVSGNNPFEPSLYPASLNAFMSGTQFFQPPRS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03447 347 Pfam Domain of unknown function (DUF702) 115 284 - -
Vimu10g03447 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 333 IPR007818 GO:0003700|GO:0006355
Vimu10g03447 347 MobiDBLite consensus disorder prediction 1 35 - -
Vimu10g03447 347 NCBIfam LRP1 C-terminal domain 235 283 IPR006511 -
Vimu10g03447 347 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03447 Vimu-Chr10 44276968 44278494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03447 1 347 C2H2 Transcription Factor Family AT1G75520 43.122 1.44e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu10g03447 DUF702 2.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03447 - - gmx:100818588 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03447 10 44276968 44278494 Vimu7g03005 7 25329978 25331628 ECH
Vimu10g03447 10 44276968 44278494 Vimu10g03658 10 45716785 45717944 ECH
Vimu10g03447 10 44276968 44278494 Vimu10g03447 10 44276968 44278494 ECH
Vimu1g03178 1 43940596 43943151 Vimu10g03447 10 44276968 44278494 PCT