Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03445 ATGAACTTTTTTTCTGTAGAACCAGAGCATTTGCCTCACAGTTTGGTTAATTTATTTTGTGTTTGTGGTTTTTTAGAAGTCCTAACGGTGAATCGAGGTCGCTCTCTCCCAACGATGGATCTGCTACAGTCAGAGCCTATGCAAATAGTTCGATTGCTCATTCCAACCGAATCAGCTTATCGATCCATCTCTTACCTCGGCGATCTCAGCCTTTTCCAATTCAAAGACGTGCGACTCCTCTTCAGTTCTCATTGCTCTTCCAAGCATACGCCGCGGTTGTTTAAGGAAGAAATGACGAAAGCAGGTGTATCACCCTCAACGTGGCCAGCAGGTGAGGATAATGTTGATCTGAAAAGTTTGGAGTATCTGGTGATTATTTTTTTGTTTGTCTTGGTTAAACTTGAAGAACTTGAACCAGGTCTTCAGATTAACGCAAATAATGAGAAGTTGAAACACGCTTACAATGAGCCATCAGAGGATAAACTTGTTCAAAAGAAGGATAAGAAAACAGAGGTCCAAGTGGTAATGCCTTTTTTAATATATTGTTTCAGGTTGGCGAATTTTTCTATTCAGCAAAAAATTAAAAATGCTGTAGCTCACCAGAAAAAGCTTGAATTCCAGATAACTGCTGAAAGATCTATTGACAGTCCATTATTATTGGAACAGGAGACGACAACAAAGCAAATTAAGCTGGGGTTTATCAGTGGACTTGTTTCGAGGGAAAAATCAGTTACATATGAAAAAATTCTATTTCGTGCTACTGGGGGAAACGTTTTTCTCAAACAGTCAAACAGGCTGTGGTTGAACATTCTGTTCTTGATCTTTTGTCAGGGAAGAAGATTCACAAAGTATTTCAGCAGTTCTCAAGTTGAGGCGATATTTCAGGTCAACATAGAAATAGTGTATTTTATCTCTCTATTGTCAGGATATGTTGACAGCTATAGCCTATATAAAAGGCATCAAGGTCAATCTTACTCTTTGCTATACAAGAAGGGTGATCCTGTCGAATCAGAGTCACATAGTGTTCCCCGTGACCATGATGAGTTTGACTTCAGCGAGGTTTTGGTGCACCAACTCATACATATAATCGAATTTGCGCTTGGAGCTGTGTCTAATACAGCTTCGTATCTACGTTTTCGGGCCCTCAGCTTAAGCTTAGCTTATTCGGAACTGTCAAGTCTTTTCTATGACAATGTTCTGCTTCTGGCCTGGGTTACGTTCTTTAGTTGTGTTATAGAAAAGTGGCGGGCCATTAAAGAAGGTATAATAACACTATTACTCTCGTTGTTGGCATTTTTGTTTTTTATCTGTGCTTTCTTGCATGTTTTGAGACTTCACTGGGTGGAGTTCCAGAACAAATTCTATGAGGTAGATGGACTACAAGTTATTCGCGTTTTTATTTACATGATGAGGATGAGCTGTAAGTTTGGAAATGCTAGATGA 1443 0.3936 MNFFSVEPEHLPHSLVNLFCVCGFLEVLTVNRGRSLPTMDLLQSEPMQIVRLLIPTESAYRSISYLGDLSLFQFKDVRLLFSSHCSSKHTPRLFKEEMTKAGVSPSTWPAGEDNVDLKSLEYLVIIFLFVLVKLEELEPGLQINANNEKLKHAYNEPSEDKLVQKKDKKTEVQVVMPFLIYCFRLANFSIQQKIKNAVAHQKKLEFQITAERSIDSPLLLEQETTTKQIKLGFISGLVSREKSVTYEKILFRATGGNVFLKQSNRLWLNILFLIFCQGRRFTKYFSSSQVEAIFQVNIEIVYFISLLSGYVDSYSLYKRHQGQSYSLLYKKGDPVESESHSVPRDHDEFDFSEVLVHQLIHIIEFALGAVSNTASYLRFRALSLSLAYSELSSLFYDNVLLLAWVTFFSCVIEKWRAIKEGIITLLLSLLAFLFFICAFLHVLRLHWVEFQNKFYEVDGLQVIRVFIYMMRMSCKFGNAR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03445 480 Pfam V-type ATPase 116kDa subunit family 336 461 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu10g03445 480 PANTHER VACUOLAR PROTON ATPASES 41 264 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03445 Vimu-Chr10 44260523 44266031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03445 319 459 Primary Pumps ATPases(2) AT4G39080 52.414 2.52e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03445 K02154 - vra:106762221 274.248