Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03442 ATGTGGTGCTCCGTCCCGGAACGGGTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTACGCCGGATTCCACGTCGTCTCTCGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACGTTATTGCCTTATTCCTGCTCCTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTCTTAAAGTTCTTTCTTCTGGCGCTTGTCGGGATTACTGCGAACCAAGGTTTCTACTTGCTTGGTTTGGACAACACATCACCGACCTTTGCATCGGCGATACAAAACTCTGTCCCAGCCATTACATTTCTGATGGCAGCCATATTCAGGCAAGCCCTTAATGAATTGATAGAGCAAGTTCGACTGAATCGAAAGGATGGGATAGCGAAGGTTGCGGGAACAGTATTCTGTGTGGCTGGGGCATCGGTGATTACCCTATACAAGGGTCCAACAATATATAGTCCAACTCCACCACTGAACGCTAGCCCAGTAATTGACTTTGGTTCACTCTCGCTGGGAGATGCAAAGGGAAAGAACTGGACCCTCGGGTGCCTCTATCTCATAGGACACTGCTTGTCCTGGTCTGGTTGGCTTGTCTTGCAAGCACCTGTAATCAAGAAGTACCCTGCTCGTCTCTCTCTCACTTCCTATACATGTTTCTTTGGCCTCATACAATTCTTCGTCATTGCTCTCATCGTTGAAAGAGATGCTCAGGCTTGGATTTTCCAATCTGGTGGAGAAGTTTTCACCATCTTCTATGCGGGAGTAGTGGCATCTGGAATTGCCTTCGCTGTTCAGACATGGTGCGTCGACAGAGGTGGCCCTGTGTTCGTTGCAGTGTATCAACCTGTTCAAACTCTTGTTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCATAGGAGCAGTATTGATCGTTGTGGGACTGTACTTTGTGTTGTGGGGCAAAAACGAAGAGAGAAAGTTTGCAAGGGAACAGGCTGCGATCACGTCCACCCCAGAGCACAGTGGAATCAGATCCGCAAGCCATGCCAAAACATCACTCACTCAGCCTCTTCTCCTCCCTTCATCTACGGAGAACGTGTGA 1146 0.4904 MWCSVPERVQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALFLLLPFAYFLEKKERPAITLNFLLKFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAIFRQALNELIEQVRLNRKDGIAKVAGTVFCVAGASVITLYKGPTIYSPTPPLNASPVIDFGSLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVIKKYPARLSLTSYTCFFGLIQFFVIALIVERDAQAWIFQSGGEVFTIFYAGVVASGIAFAVQTWCVDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIVVGLYFVLWGKNEERKFAREQAAITSTPEHSGIRSASHAKTSLTQPLLLPSSTENV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03442 381 PANTHER WAT1-RELATED PROTEIN 13 345 IPR030184 GO:0016020|GO:0022857
Vimu10g03442 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 338 - -
Vimu10g03442 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 161 - -
Vimu10g03442 381 Pfam EamA-like transporter family 195 333 IPR000620 GO:0016020
Vimu10g03442 381 Pfam EamA-like transporter family 15 123 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03442 Vimu-Chr10 44227835 44230465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03442 1 381 Nodulin-like Gene Family AT1G75500 74.419 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03442 - - gmx:100786714 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03442 10 44227835 44230465 Vimu10g03442 10 44227835 44230465 ECH
Vimu1g03173 1 43900503 43901613 Vimu10g03442 10 44227835 44230465 PCT