Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03429 ATGGCATCATCAAGTGGAAACTCGTCTATTTGCACCAAGATTCAAAGCTCGGGCTCCGAAGGAGATTTACAGGTTCTGACGTTGGACGAGAGAAAGAACAAGAGAAAACAATCGAATCGTGAATCCGCGAGAAGATCTCGGATGCGAAAGCGTGACCACTTGGAAGACCTCAGGAAGCAAGTGTCAGAGTTCACAAAGGAGAACAGAGAAATCATGGCGACCATAGACACGACCACACAACACTATCTGAAAACCGAGGCAGAAAATTGCGTTTTGAGGGCCCAGATGGGTGAGCTTAACCAACGGCTCCAATCGCTGAACGACATCATCGTGGACATCATCAACACAACCACCTCCTACGAAAGGGACTGTTATCTAACGAGTTCACAAAGTTTTAGCAACACTGTCTGTCTCAACCAACCTGTTTTTCAGTGCTATGGATCTGAGAAGAAAAAAAGAAGAAAATTGAATGTAGTTTTGGTTACGTACAGTGGTAGGGCTGTATGA 507 0.4517 MASSSGNSSICTKIQSSGSEGDLQVLTLDERKNKRKQSNRESARRSRMRKRDHLEDLRKQVSEFTKENREIMATIDTTTQHYLKTEAENCVLRAQMGELNQRLQSLNDIIVDIINTTTSYERDCYLTSSQSFSNTVCLNQPVFQCYGSEKKKRRKLNVVLVTYSGRAV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03429 168 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vimu10g03429 168 PANTHER BZIP TRANSCRIPTION FACTOR 44 14 125 - -
Vimu10g03429 168 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Vimu10g03429 168 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vimu10g03429 168 MobiDBLite consensus disorder prediction 1 52 - -
Vimu10g03429 168 Pfam bZIP transcription factor 31 84 IPR004827 GO:0003700|GO:0006355
Vimu10g03429 168 Coils Coil 40 74 - -
Vimu10g03429 168 Gene3D - 29 86 - -
Vimu10g03429 168 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g03429 168 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 80 IPR004827 GO:0003700|GO:0006355
Vimu10g03429 168 FunFam BZIP transcription factor 29 80 - -
Vimu10g03429 168 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03429 Vimu-Chr10 44129063 44129589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03429 28 110 bZIP Transcription Factor Family AT4G34590 63.855 4.33e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g03429 bZIP_1 7.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03429 K25786 - gmx:778188 201.445