Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03428 ATGGCTACTCCTGTTGATCCTCCTAATGGAATCAAGAATGAAGGGAAGCATTATTTCTCCATGTGGCAAGCTCTGTTCGAGATTGATTCAAAATACGTGCCAATCAAGCCCATTGGTCGCGGTGCATACGGGATCGTCTGCTCTTCTGTGAATAAAGAGACCAATGAGAAGGTTGCCATAAAAAAAATACAGAATGCCTTTGAGAACCGGATTGATGCTTTGAGAACTTTGCGCGAACTCAAGCTTCTTCGCCACCTTCACCATGAGAATGTAATTGCTTTGAAGGACATCATGATGCCTGTTCAGAGGAATAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGACACGGATTTGCACCAGATTATTAAGTCTTCTCAAGCACTGTCTAATGATCACTGCCAGTATTTCCTCTTTCAGGGATTTTGGGCACCAGAGCTCCTACTCTGCTGTGACAACTACGGAACATCAATTGATGTTTGGTCGGTTGGATGCATCTTTGCTGAGCTTCTTGGTCGAAAACCGATTTTCCCTGGTTCAGAGTGTCTCAACCAGCTGAAATTGATCATCAATATCCTTGGTAGTCAAAGGGAGGAGGACATCGAGTTCATTGATAATCCAAAGGCAAAAAAGTATATCAAATCACTTCCTTCTTCTCCTGGAACCCCCTTTTCGCGACTTTATCCTAATGCACATCCTTTGGCAATTGATCTTCTGGCAAAGATGCTTGTTTTCGATCCAACAAAGAGGATCAGTGTCACTGAAGCTCTTCAACACCCTTACATGGCCCCTCTTTACGATCCTAACTGTGACCCCCCAGCTGTGATTCCAATTGATCTTGACATTGATGAGGACCTGGGAGAAGAGATGATAAGGGAGATGATGTGGAAAGAAATGCTTCATTACCATCCTGAAGCTGCTGTAGAGAGTGCAGGGCTGTGCTGA 948 0.4399 MATPVDPPNGIKNEGKHYFSMWQALFEIDSKYVPIKPIGRGAYGIVCSSVNKETNEKVAIKKIQNAFENRIDALRTLRELKLLRHLHHENVIALKDIMMPVQRNSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQGFWAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKKYIKSLPSSPGTPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVTEALQHPYMAPLYDPNCDPPAVIPIDLDIDEDLGEEMIREMMWKEMLHYHPEAAVESAGLC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03428 315 Gene3D Transferase(Phosphotransferase) domain 1 116 141 - -
Vimu10g03428 315 Gene3D Transferase(Phosphotransferase) domain 1 145 284 - -
Vimu10g03428 315 FunFam Mitogen-activated protein kinase 18 126 - -
Vimu10g03428 315 FunFam Mitogen-activated protein kinase 142 281 - -
Vimu10g03428 315 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Vimu10g03428 315 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 145 280 - -
Vimu10g03428 315 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vimu10g03428 315 Gene3D Phosphorylase Kinase; domain 1 285 306 - -
Vimu10g03428 315 Pfam Protein kinase domain 142 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03428 315 Pfam Protein kinase domain 33 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03428 315 SUPERFAMILY Protein kinase-like (PK-like) 25 270 IPR011009 -
Vimu10g03428 315 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03428 Vimu-Chr10 44115698 44117252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03428 1 314 MAP Kinase Gene Family AT1G10210 69.459 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu10g03428 Pkinase 3.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03428 K20535 - gmx:100798863 558.14