Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03425 ATGGAAGCCCCTGATTGTATGTATCGTGGTGAAGCATTGAGCATTCCTCCAAGCGCTCCTACCCCAAAACATTCTCTCTATCTGTCCAATCTCGACGACCAAAACTTCCTAAGGTTTTCCATCAAATACTTATACCTCTTCAACAAGTCCTTGAACTTGGATTTGTTGAAGTCTTCTCTCGCCAGAGTTCTCGTGGATTATTACCCCTTGGCCGGTCGCCTGAGGACCGTCGATCATCACAAGCTCGAGGTCGATTGCAATGGACAGGGTGCTCTCTTTGCCGAGGCTTTCACTCACACCACTCTTCATCAACTTCTCGAATCTTCCAAGACTCCAAACAAATCTTGGAAGAAGTTCTTGTATAAGGTCGAAGCTCACACTTTCGTCGATGTTCCTCCTCTCGTAGTCCAGGTAACGAGGCTGGGTTGCGGGGGAATGATCCTGTGCACGGCGATCAACCACTGCGTATGCGACGGCATAGGGACGTCTCAGTTCCTACACGCCTGGGCACAGCTGACGAAAAAGCCAGAAGCGGAATTGACGATCATGCCCTTCCACTGGCGCCACGTGCTGAAACCCAGACACCCTGCGGAGGTAAAGTTCCGTCACGCGGGCTACACCGCACCAAACCCAACCCCTCAAGTGGACCTCCTAAAGTTCATACAGTCACAGCCCTTGGTAGCCACATCCTTCACCCTCACCCCCTCCCACGTCCTTCGCCTCAAGAAAGAGTGCGTCCCCTCCCTCAAGTGCACCTCCTTCGAAACCGTTGCGGCCCACACCTGGCGCTCTTGGATTCGTTCGGTGGGCCAATCCCTACCGTCCAAACTCACTGTGAAGCTCCTTTTCTCGGTCAACGTTAGAAGAACAGTTGACCTTCCGCAGGGGTATTACGGGAACGGATTCTTGCTAGCGTGCGCTGAGAGCAGCGTGGAGGACTTAGTGGACAGTAACCTGCGCCACGGGGTGAAACTTGTGCAGGAAGCTAAGGCGAGGTTGAAAGAGGAGGAGTACGTAAGGTCAATGGTTGACCTGTTAGAGGACAAAACTGTTAAAACGGATCTTTCGACGAGTTTGGTTATTTCGCAGTGGTCTAGACTGGGGTTGGAAGAGGTGGATTTTGGGGAAGGGAAACCTTTGCATATGGGTCCTTTGACCAGTGATATTTACTGCTTGTTCTTACCCGTCGCCGGTGACGCTAATGCCGTCAGAGTGCTGCTGTCTGTCCCCGAGACCATGGTGGAACGTTTTCAATATCAGATGATGAGACAAAGTCGGGAAGAAAATGAAGAAAACGGATTCTTCTGA 1308 0.5161 MEAPDCMYRGEALSIPPSAPTPKHSLYLSNLDDQNFLRFSIKYLYLFNKSLNLDLLKSSLARVLVDYYPLAGRLRTVDHHKLEVDCNGQGALFAEAFTHTTLHQLLESSKTPNKSWKKFLYKVEAHTFVDVPPLVVQVTRLGCGGMILCTAINHCVCDGIGTSQFLHAWAQLTKKPEAELTIMPFHWRHVLKPRHPAEVKFRHAGYTAPNPTPQVDLLKFIQSQPLVATSFTLTPSHVLRLKKECVPSLKCTSFETVAAHTWRSWIRSVGQSLPSKLTVKLLFSVNVRRTVDLPQGYYGNGFLLACAESSVEDLVDSNLRHGVKLVQEAKARLKEEEYVRSMVDLLEDKTVKTDLSTSLVISQWSRLGLEEVDFGEGKPLHMGPLTSDIYCLFLPVAGDANAVRVLLSVPETMVERFQYQMMRQSREENEENGFF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03425 435 Pfam Transferase family 15 421 - -
Vimu10g03425 435 Gene3D - 11 208 IPR023213 -
Vimu10g03425 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 15 418 - -
Vimu10g03425 435 SUPERFAMILY CoA-dependent acyltransferases 39 184 - -
Vimu10g03425 435 Gene3D - 219 421 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03425 Vimu-Chr10 44103740 44105946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03425 17 384 Monolignol Biosynthesis Gene Families AT5G48930 30.303 6.96e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03425 - - var:108341288 853.588