Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03403 ATGGCCTCAAGCCAGGGTTGGACACCGAAGCAGAACAAAAGATTTGAGAATGCCCTTGCCATCTTCGACGAGGACACCCCAGATAGGTGGCACAACCTGGCCAGAGCCGTCGGAGGAAAAACTGTGGAAGACGTCAAAAGGCATTATCAGAAGCTCGTCGAAGATGTGAAGCAGATCGAGGAAGGCCATGTGCCTCTTCCCAATTACCGAACTGTTTCAACCATGGCAAGCAGCATCAGAGGTTACGGTTACATCAATGAAGAAAACAGTGTGATTGTGTTTATGATAATGCAGGATGAAGGGTCTGAGTCTGCAGTGAAGGTTGATTTAGCAGTAATATGCTGTGGATGCTTGGATTAG 360 0.4778 MASSQGWTPKQNKRFENALAIFDEDTPDRWHNLARAVGGKTVEDVKRHYQKLVEDVKQIEEGHVPLPNYRTVSTMASSIRGYGYINEENSVIVFMIMQDEGSESAVKVDLAVICCGCLD 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03403 119 Gene3D - 1 66 - -
Vimu10g03403 119 FunFam Transcription factor SRM1 1 66 - -
Vimu10g03403 119 Pfam Myb-like DNA-binding domain 6 52 IPR001005 -
Vimu10g03403 119 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Vimu10g03403 119 SMART sant 3 55 IPR001005 -
Vimu10g03403 119 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 77 IPR044636 GO:0003700
Vimu10g03403 119 CDD SANT 7 53 IPR001005 -
Vimu10g03403 119 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03403 Vimu-Chr10 43978034 43978870 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g03403 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03403 - - vra:106761704 187.578