Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03390 ATGTCCAAACGATTCAAAATCAAATTCAATGTCCCTTCCATATGTCGCTCAAAAGACCTTTCTTCTTTCCCAGGAAACCCCGTTCCTGCCATATACCGTCTCTCTCCCGTTAACCACAACGCTCGTCACACTGCTCATCCCAACCTTCCTTCTCCCCAGTCGTTCAAGATAACGTCCTCCGTTTCGCAGGGGTGCAAAATGTGCCGTGACAAGGAGCCCTACAAAGCCAAATCCAGAAGCCGGAAAAGCACGTCGAGCGTTCCGTCGCGGCGAAGCGATTTTCTGATCGACAACGTCGAGGAAGAGGAAAGCGAGACTCTGATTTCTTGCTTGACAAGTTTCTCCGACGAGATTTGTCACGACGAGGCGAGGGATTTGAGAAACGGTAGGCATAGAAGGAAGACGAGCAGCGTGAAGAAGGTTCAGAGCGTGAGGTTTCGGAGCTCTTCGGAGAATCTAGGAGGAGCGGGAACGACGGAGAAGGTGAAGAAAACGTCGACGACGGTGACTCGGAGCAATGTTGAAGGGAAGGTGAGGGAGAGCTTTGCGGTGGTGAAGAAGTCGAAGGATCCTTACGAAGACTTCAAGAAATCGATGATGGAGATGATAACGGAGATGGAGATGTCTGAGGCGGACGACCTGGAACAGCTTTTGCAGTGTTTCTTGGCTTTGAACTCGCGGAGTTACCATGCAGTCATCGTAAGAGTTTTCATGGAGATTTGGCAACAAATGTTCGTGTGGAACCCAAAGTCCGCGAAAAATCTCACGGACGTTAAAACGGAAACGGAAAAGTAA 795 0.4981 MSKRFKIKFNVPSICRSKDLSSFPGNPVPAIYRLSPVNHNARHTAHPNLPSPQSFKITSSVSQGCKMCRDKEPYKAKSRSRKSTSSVPSRRSDFLIDNVEEEESETLISCLTSFSDEICHDEARDLRNGRHRRKTSSVKKVQSVRFRSSSENLGGAGTTEKVKKTSTTVTRSNVEGKVRESFAVVKKSKDPYEDFKKSMMEMITEMEMSEADDLEQLLQCFLALNSRSYHAVIVRVFMEIWQQMFVWNPKSAKNLTDVKTETEK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03390 264 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 63 245 IPR038933 GO:0045892
Vimu10g03390 264 Pfam Transcriptional repressor, ovate 188 245 IPR006458 -
Vimu10g03390 264 NCBIfam uncharacterized plant-specific domain TIGR01568 182 244 IPR006458 -
Vimu10g03390 264 MobiDBLite consensus disorder prediction 70 96 - -
Vimu10g03390 264 ProSiteProfiles OVATE domain profile. 184 243 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03390 Vimu-Chr10 43898374 43899808 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu10g03390 Ovate 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03390 - - gmx:102662518 348.977