Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03386 ATGGCGGAGCCTCAGAATCCTTCACCATTCACACATTCTTCAGCAACGGAAATCGCGCCACAACCACAACCTCTGCCACCTCCCAAGCGGAAGCGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGTTGGCCACGAACCGTTTCGTCTGCGAGATCTGTAACAAAGGGTTCCAGCGCGATCAAAACCTGCAGCTTCACCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAGCGGGGGAGCAAGGAACCGCGGAAGAAGGCGTACGTGTGTCCCGAGCCTTCGTGCGTCCACCACAACCCTGCCAGGGCGTTGGGCGATCTCACCGGCATCAAGAAACACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCTGACTGGAAAGCCCATACAAAAACTTGTGGCAGCAGAGAGTACCGCTGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTACTAGCGCAAGAGAGCGCCAGGACCCAGGTCCAAGACCAGGCCCAGAATGTTAGCACCAGCAACGCTGATTTGGGTTCTTCGCCCCCTGCGCCTCCACTTACTCCCTCTGCGTCTGTGGTGTCTCCAACCTTGTCCGTTCAGAGCTCAGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAAAGCAACCTGCTTCGGGACAAGCAGCACCCCTTCAAGTTCCAGTTCTTGCACTACTGTTTTTGCAAGTGCGTTGGCACCGTCCACATTAACAACTCATTCACATTCTCAATCACCGTCACCATCAACTTCCTCATTCTTCAACCTCATGTCAAATTTGGCTCGCTCCGATAGTCCTAACGCCATCACCAATCTCAGAGAAACCACATCCCTCTCCCTCTCCTCACCACTCTATCTCTCCAACAACGACCCTTCCCACTTCACAGCATCTCCTCAGCCTGCACTATCTGCCACTGCATTGCTCCAAAAAGCAGCTCAAATGGGTGCATCCACTGCTTCCCTTCTTCGTGGCTTAGGCTTAGCAACGACATCACCGTCGTCCTTGGTCAAAGACGAGGGTTTTAACATTAGTGCAACCACAACAGCACAATGGAACGGCCAGATAAAGCAAGAGAATCAGCCCATGGTGGATAACCTTGGGCTTGGGCTTCCCTGTGGGAGTGATCTGATGATGGGCTCTTCTACCCCATTTGTGGGCCAGCCAATGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGCCTCTCTGCTTTGGTCACGTCTTTCGGAGGGAACTTTGATTCACCCGGTGATGGAGGAGTTCACCGGTAG 1398 0.5358 MAEPQNPSPFTHSSATEIAPQPQPLPPPKRKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQDQAQNVSTSNADLGSSPPAPPLTPSASVVSPTLSVQSSENPRKLSPMSPKATCFGTSSTPSSSSSCTTVFASALAPSTLTTHSHSQSPSPSTSSFFNLMSNLARSDSPNAITNLRETTSLSLSSPLYLSNNDPSHFTASPQPALSATALLQKAAQMGASTASLLRGLGLATTSPSSLVKDEGFNISATTTAQWNGQIKQENQPMVDNLGLGLPCGSDLMMGSSTPFVGQPMTRDLLGLSIGGGASRGGLSALVTSFGGNFDSPGDGGVHR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03386 465 Gene3D Classic Zinc Finger 38 105 - -
Vimu10g03386 465 MobiDBLite consensus disorder prediction 1 42 - -
Vimu10g03386 465 MobiDBLite consensus disorder prediction 221 259 - -
Vimu10g03386 465 MobiDBLite consensus disorder prediction 193 211 - -
Vimu10g03386 465 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Vimu10g03386 465 SMART c2h2final6 134 154 IPR013087 -
Vimu10g03386 465 SMART c2h2final6 99 129 IPR013087 -
Vimu10g03386 465 SMART c2h2final6 58 80 IPR013087 -
Vimu10g03386 465 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vimu10g03386 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vimu10g03386 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 434 IPR031140 -
Vimu10g03386 465 Gene3D Classic Zinc Finger 112 192 - -
Vimu10g03386 465 MobiDBLite consensus disorder prediction 1 19 - -
Vimu10g03386 465 FunFam protein indeterminate-domain 12-like 37 105 - -
Vimu10g03386 465 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vimu10g03386 465 MobiDBLite consensus disorder prediction 193 259 - -
Vimu10g03386 465 Pfam Zinc-finger of C2H2 type 58 80 - -
Vimu10g03386 465 Coils Coil 463 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03386 Vimu-Chr10 43869915 43872452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03386 29 433 IDZ Gene Family AT5G66730 51.310 2.91e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu10g03386 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03386 K25869 - gmx:100800089 685.256