Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03376 ATGGCAAGTGGGTTTGGGGAATCAACTGGGAGGTCACCCCCAAGCCCTTCGTACTTCAACAATAATAATAGCAATGATGCTGGCAATTTTGAGTGCAACATTTGCTTTGAATTAGCGCAAGATCCCATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCCCTTGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGACCTCCACTGATCCGAGATCCAAGTCTATTCCGGGCATGAATATCCCACATCGTCCGGCCGGTCAGAGACCTGAAACTGCTCCTCCACCGGAAACAAATAATTTTCCTCATGGGTTTGGATTTATGGGTGGCCTGGGAGGATTTGCGCCACCGCCAATGGCATCAACGAGATTTGGGAATTTCGGATTGCCTGCAGCTTTTGGTGGCTTTATACCGTCCTTTTTCAACTTTCAGTTGCACGGGTTTCACGATGGGGCCTTGTATGGGGGAGCGTCTGGTTTTCCTCATGGGTTTTCTAATGCATTTCATGGTATCCATGCTCATGGATATCCTCTTGGCACTCATCAAGGTCAACAAGATTATTATTTGAAGAAGCTGCTTCTAGTTGTTGTTTTCTGTGTTCTTCTTGCTTTTATTTGGCAATAG 693 0.4646 MASGFGESTGRSPPSPSYFNNNNSNDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGMNIPHRPAGQRPETAPPPETNNFPHGFGFMGGLGGFAPPPMASTRFGNFGLPAAFGGFIPSFFNFQLHGFHDGALYGGASGFPHGFSNAFHGIHAHGYPLGTHQGQQDYYLKKLLLVVVFCVLLAFIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03376 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vimu10g03376 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vimu10g03376 230 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g03376 230 SMART ring_2 32 72 IPR001841 -
Vimu10g03376 230 CDD RING-HC_AtRMA-like 30 74 - -
Vimu10g03376 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Vimu10g03376 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vimu10g03376 230 MobiDBLite consensus disorder prediction 86 118 - -
Vimu10g03376 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vimu10g03376 230 SUPERFAMILY RING/U-box 29 85 - -
Vimu10g03376 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03376 Vimu-Chr10 43777044 43777736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03376 30 213 C3H Transcription Factor Family AT1G19310 65.625 6.11e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03376 K10666 - gmx:100794086 396.741