Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03367 ATGATCACTACACAAAAATACCCGCTTTTCTGCTTCTACTTAGTACTGGCTCAATTCATTTTTTTCATTCCATTAACCACTACCCAATTGCAGCATCACCAGTGCCGCCAAACATGCGGTTCCTCCGATCCTTTCCCTTACCCTTTCGGATTCTCCTCCGGATGCTTAATCCGTTTGAATTGCACCGCCGGAGCAGCCTCCGTCGGAGAATTCCCCATCCAAAAGGTCACCACATACAGCATAATCGTCAACATCGAAGCTCAGTGCACTCGTCCGTTCGATAGTTTTGGCCAACTCTTCAGCCACAAATACGCGCCCACTTTGCGAAACGTGATTCTGTTAGACAACTGTACCGGAACTTCCTTGCCCTTTCCCTGCTCCATTTCGGGGAATCTGGTCCGGACCCACTTCGAATCCGTGGGATGCAACGACACAGTAGCGGACAATTTGACTTGCTACTTCGAGAACAAAACAAGCGGTTTCGTGAATCGCCGAGAATTGGAGTCTTCCGGGTGCAAGTACTTTATGTCATCTCTTTCATTCCCAGATGTTACAGACGTCTCCGGTGAGCCTCTGTCTTTGGAAGTAAATACAATCGAACTTGGATGGTGGGTCCAGGGAGATCGATGTCTGTGTTCTGATCACGCCAATTGTACCAAGCTTCAATCCCCGGTTGACGGAAAGCCCGGTTTCCGCTGTAGCTGCCGCGACGGCTTCATCGGCGACGGGTTTTCGGCCGGAACAGGTTGCCATAAAGCCTCGTCATGCAACCCAGCGAAGTACTTATCTGGCCGATGTGGAGGAACAACCAGATTCATTGTCTTAATTGGAGGGTTTGTTATCGCCGTTTCACTGATTATCACTGCGGGTTCACTATGCTGTTTCTTCCGCCGGCGCACCAAATTGAGAGTCACAAAGAGCACAAAAAGACGATTAACCGAAGCCACCGGAAACAATGGTGTTCCTATCTATCCCTACAAAGACATTGAGAGAGCCACGAATAGTTTCTCAGAGAAACAACGGTTGGGAACTGGGGCGTACGGCACGGTTTATGCAGGGAAATTGTACAGCGATGAATGGGTTGCCATCAAAAGAATAAAACACAGAGACACTGACAGTATTGAACAGGTAATGAACGAGATCAAGCTCCTGTCCTCTGTTAGCCACACCAATTTAGTTCGCTTGTTGGGTTGCTCCATTGAACACGGAGAACAAATCCTGGTGTACGAGTTCATGCCCAATGGAACACTGAGTCAGCACTTGCAGAAGGAGAGAGGACAAGGTCTTCCTTGGTCTGTTCGACTCACCATTGCCACTGAAACAGCACAAGCTATCGCGCATCTTCATTCAGCCATTAATCCCCCCATCTACCACCGAGACATCAAATCCAGCAATATACTTTTAGACCACAATTTCAGGTCAAAAGTGGCAGACTTTGGTCTTTCCAGACTTGGAATGACCGAAATATCGCACATTTCAACTGCTCCACAGGGAACTCCTGGCTATGTGGATCCACAATATCATCAAGATTTTCACCTCTCTGACAAGAGCGATGTTTATAGTTTTGGTGTTGTTCTTGTTGAGATCATAACGGGGCTAAAAGTGGTAGACTTTTCACGTCCTCCTAATGAAGTGAACTTGGCTTCTCTTGCTGCAGATAGGATTGGAAAAGGGCTTTTGGATGAGATTATAGACCCATTCCTTGAACCCGAAGCAAGAAGTGACGCTCGGACCCTTTCTTCCATACACAAGGTGGCTGAGTTGGCATTTAGATGCCTAGCGTTCCACAGGGACATGAGGCCTTCGATGACGGAAGTGGCTTGTGAGTTGGAGCAACTTAGGTTGAGTCAATGGACAACATTGGGAGAAAACAATTGTGCAACCTCAACGGAGTTGTCCTCTTGCTCTTCCTCATCCAATGAAAGTGAGAAACCATTGAGTACCACAACGAAGAACGTTGGAGAAAAGGGTAAAGGGTACCTTAATATTCAAACTAGGCCTATTACTTTGAAATCATTACAAAGGCCTAATATTAATTCACCAGTCTCGGTGCAAGACCAAGAGTTATGGTTGAGTGAACAGAGTTCTCCTTCATCAAATAGTTTTCCAAGCAAGTCATTTGATTGA 2127 0.4673 MITTQKYPLFCFYLVLAQFIFFIPLTTTQLQHHQCRQTCGSSDPFPYPFGFSSGCLIRLNCTAGAASVGEFPIQKVTTYSIIVNIEAQCTRPFDSFGQLFSHKYAPTLRNVILLDNCTGTSLPFPCSISGNLVRTHFESVGCNDTVADNLTCYFENKTSGFVNRRELESSGCKYFMSSLSFPDVTDVSGEPLSLEVNTIELGWWVQGDRCLCSDHANCTKLQSPVDGKPGFRCSCRDGFIGDGFSAGTGCHKASSCNPAKYLSGRCGGTTRFIVLIGGFVIAVSLIITAGSLCCFFRRRTKLRVTKSTKRRLTEATGNNGVPIYPYKDIERATNSFSEKQRLGTGAYGTVYAGKLYSDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEHGEQILVYEFMPNGTLSQHLQKERGQGLPWSVRLTIATETAQAIAHLHSAINPPIYHRDIKSSNILLDHNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPPNEVNLASLAADRIGKGLLDEIIDPFLEPEARSDARTLSSIHKVAELAFRCLAFHRDMRPSMTEVACELEQLRLSQWTTLGENNCATSTELSSCSSSSNESEKPLSTTTKNVGEKGKGYLNIQTRPITLKSLQRPNINSPVSVQDQELWLSEQSSPSSNSFPSKSFD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03367 708 MobiDBLite consensus disorder prediction 629 658 - -
Vimu10g03367 708 ProSiteProfiles Protein kinase domain profile. 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03367 708 Gene3D Laminin 211 245 - -
Vimu10g03367 708 FunFam Wall-associated receptor kinase-like 14 303 411 - -
Vimu10g03367 708 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Vimu10g03367 708 MobiDBLite consensus disorder prediction 629 655 - -
Vimu10g03367 708 FunFam Wall-associated receptor kinase-like 20 412 623 - -
Vimu10g03367 708 FunFam Wall-associated receptor kinase-like 14 isoform A 210 245 - -
Vimu10g03367 708 CDD STKc_IRAK 342 613 - -
Vimu10g03367 708 Pfam Protein kinase domain 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03367 708 SUPERFAMILY Protein kinase-like (PK-like) 315 611 IPR011009 -
Vimu10g03367 708 MobiDBLite consensus disorder prediction 683 708 - -
Vimu10g03367 708 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vimu10g03367 708 SMART serkin_6 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03367 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vimu10g03367 708 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 654 IPR044652 GO:0004672
Vimu10g03367 708 Gene3D Transferase(Phosphotransferase) domain 1 412 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03367 Vimu-Chr10 43699505 43704207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03367 35 702 Receptor kinase-like Gene Family AT2G23450 52.135 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu10g03367 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03367 - - gmx:100777480 1136.71