Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03366 ATGCTGGAGCTCCTCTGTTCTCGCCGCATCGACGCGCTGAAGCCCGTGATGGAAGCCGAAGTGAAAGCAGCGATGAGAGAGAGTTATAATTTGTGGTTGAAGAAGAAAAACGGCTTTTCCGAAATGAATAGGTGGTTTGGGAACATAGCGTTGAACATTATGTTCCAAACTGTGGTAGGAAAACGTTTTTTTAGTGACGGCGACGTGAACGAAGAGAACGAACGGATCCGAAAAGCATTCAGGGAGTTGTTTGATCTGAGCAGTTCACTCGCTGTGTCTGACTGTCTGCCCTATTTGAGATGGTTGGACTTGGATGGTAAAGAGAAGAAAATGAAGAGAACAGCGAAAGAGATAGATTGGTTTATCCAGATTTGGCTTGAAGAACACAAACGTAACCGGGATTGTGGTTCAGGTGAACGGAAACAGAGCCAGGACCTGATGGACGTGCTTCTTGGACTTGTTGAAGAGGGTGAAGAGTTTGATGGTCATGACTCTGACACCACAATCAAAGCTATGTGCCTGTCTTTAATTATGGCTGGTTCAGATACCACAACAAGAACATTGGCATGGGCTCTGTCTTTACTTCTCAATAATCGTGAAATTCTACAAGAAGCCATTAAAGAATTAGATACAGAAATTGGAAGTGAAAGGATGGTAGAGGTATCAGATTTGAAGAAACTGAAGTATCTTGAATCTATTATCAAGGAAGCACTACGTTTATATCCACCTGCACCGCTTAATTTGCCACACGAGTCCATGGAAAATTGCACAGTGGGTGGATATGATGTAGCATCGGACACACGTCTTTTGACTAATCTTTCAAAACTTCAGAGAGATCCATCTTTATATGCAAATCCGCTTGAATTTTGTCCAGAAAGATTCTTAACAACCCACAAGGAAGTGGACGTGAAGGGTCAACATTTTGAGCTGATTCCATTCGGTGCAGGTAGAAGAATGTGTCCTGGAATATCTTTCGGTCTCCAAGCGATGCAACTCATACTTGCTACCTTATTGCATGGGTTTGATATTGTAACTAATGATGGAGGACCTGTTGATACGGTTGAACAGAACATCAGAGCTTTTCCCCTCGAAGTCATTCTTACTCCGCGTCTAACTTCTCATATTTATGTTCAAATATAA 1140 0.4246 MLELLCSRRIDALKPVMEAEVKAAMRESYNLWLKKKNGFSEMNRWFGNIALNIMFQTVVGKRFFSDGDVNEENERIRKAFRELFDLSSSLAVSDCLPYLRWLDLDGKEKKMKRTAKEIDWFIQIWLEEHKRNRDCGSGERKQSQDLMDVLLGLVEEGEEFDGHDSDTTIKAMCLSLIMAGSDTTTRTLAWALSLLLNNREILQEAIKELDTEIGSERMVEVSDLKKLKYLESIIKEALRLYPPAPLNLPHESMENCTVGGYDVASDTRLLTNLSKLQRDPSLYANPLEFCPERFLTTHKEVDVKGQHFELIPFGAGRRMCPGISFGLQAMQLILATLLHGFDIVTNDGGPVDTVEQNIRAFPLEVILTPRLTSHIYVQI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03366 379 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 313 322 IPR017972 GO:0005506|GO:0016705
Vimu10g03366 379 PRINTS E-class P450 group I signature 310 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 320 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 188 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 49 67 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 231 249 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 272 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS E-class P450 group I signature 168 185 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 SUPERFAMILY Cytochrome P450 5 370 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PANTHER CYTOCHROME P450 82C3-RELATED 1 376 - -
Vimu10g03366 379 Coils Coil 192 212 - -
Vimu10g03366 379 Gene3D Cytochrome P450 3 361 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS P450 superfamily signature 311 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS P450 superfamily signature 179 196 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 PRINTS P450 superfamily signature 232 243 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu10g03366 379 Pfam Cytochrome P450 21 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03366 Vimu-Chr10 43695002 43696454 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03366 2 377 Cytochrome P450 AT4G31970 43.959 3.21e-111 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03366 - - vra:106761706 588.956