Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03349 ATGCTCCAACACTGGAATCGAATACCGTGCTTGAGAAATGAAGAAGCATGGAATGGTATACAATGGCTGCAACTGAATACAACACCGCACAAACTTTTGTCTTCTTCTCCATGGGAGACATCTCTGTCCTTTCTCTCCTCCCTTTCTCCACTCCACTTTCTGTCTGGGTTTCTATGTTGGCATTCTCCTCAACCCGAAGCCACCATTGCATCCATGGGGATCTACACGTTTAACAGCGACGAAGAAAAACGTCTCTTAGATCCGGATACGCGAAACCTGTATTCGGATACCCTTCCTTCGAAAAATCATGGAAAACCTGGATCCAGATACGCGAAACTTGTATCTGGATACGCTTGGTTCACAAATTCATGGAAAACCTCTTTTTACTGGATCCGAATACATCTGCTTGTCTTCTTCATTCGCTTGAGTCGTCATCATCAAACGCCTTCGTCCTCTGCTGCAAAAGCATGGCGAGGCACATGCCAAACTCCTCACTGTGAAAGAAGGCGGAGGAGAAGCCAGACGGAGAAGGAGAAGATGCGAAAGAGGAGAGAAAGGAAAACTTATAGAACGTTGTTCAACCTTCTAAGATCAAGGCCACCTTCGTCCCTCCCCGAAGCTTCTAGAAACTACTCTCGCCATTTCTGGGATCGCGTCGGCGGCGATTCCCTACCCTGCTTGCCCCTCCACCTTTCAATTCGACTCTCTCGTTTTCGTTTTTCTGATTCCTTCTTTGAAAATGCTTCCCGTTGCTTGCTAGGGTTTCCCAACTGTCAAATCCGCTTCCCCGAAAGCACCCTGTACCTTTTCTTTCTGCAATTAATCAACTTCGTAGTTATGGCGATCCGAGTTACCTTCTCCTTCTCTGGCTACGTAGCCCAGAATCTCGTCTCCTCCGCCGGCGTCCGCGTCGCCAATTCGCGATGCGTCCAAGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAAACGGAACTAGATTCTTCCGCCGGCGGAGTCCGAAATTTCTCCAGGTCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCGCCGGTGAGTTTCTCGGCGACGGCTGCAAGAGCCCAATCATCTTGGGCCTGATTTCAATTATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCTCCATTTAAAACAAATTCCATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCCATTCCCGACCCCACCTCGTGGGAAGTCGATAAAGGTGGCACGAAACACACCGTTCCGAACGATGTTCCCGGTTTTGGAAAGACTGGTTGGCTTTCGCGGCTTTTGAACGTGTCTTCTGAAGATGCGAAGGCTGCGTTCACTGCCATTACCGTTAGTTTGCTGTTTAAATCGTCTTTGGCTGAACCTAGATCCATTCCCTCCGCTTCTATGTATCCCACTCTTGAAGTGGGTGACCGTGTTTTAACGGAGAAGGTTTCGTTCCTCTTCAGGAAGCCTGATGTTTCAGATATAGTGATTTTTAAAGCGCCTCGTTGTTTGGAGGAGTATGGTTTTACTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCAGGGGATTGTGTTGAGGTTCGAGATGGGAAACTACTGGTAAATGGTGTTGCTGAAGAACAGGAATTTGTATTAGAACCTCTGGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGATAATCGGAATAACAGCCTTGATTCTCACAACTGGGGCCCCCTCCCAATCGAGAACATTGTTGGTAGATCCATGTTTAGGTACTGGCCTCCATCTAAGGTGTCTGACTCTGACACCCTTCGTAAACTGCCTCCTAGGAACAAATCTGTGGCAATTTCTTGA 1917 0.4862 MLQHWNRIPCLRNEEAWNGIQWLQLNTTPHKLLSSSPWETSLSFLSSLSPLHFLSGFLCWHSPQPEATIASMGIYTFNSDEEKRLLDPDTRNLYSDTLPSKNHGKPGSRYAKLVSGYAWFTNSWKTSFYWIRIHLLVFFIRLSRHHQTPSSSAAKAWRGTCQTPHCERRRRRSQTEKEKMRKRRERKTYRTLFNLLRSRPPSSLPEASRNYSRHFWDRVGGDSLPCLPLHLSIRLSRFRFSDSFFENASRCLLGFPNCQIRFPESTLYLFFLQLINFVVMAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWIRTRLFGATQKTELDSSAGGVRNFSRSNCWAQSTYSTLAGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESIPDPTSWEVDKGGTKHTVPNDVPGFGKTGWLSRLLNVSSEDAKAAFTAITVSLLFKSSLAEPRSIPSASMYPTLEVGDRVLTEKVSFLFRKPDVSDIVIFKAPRCLEEYGFTSSDVFIKRIVAKAGDCVEVRDGKLLVNGVAEEQEFVLEPLAYEMDPMVVPEGYVFVMGDNRNNSLDSHNWGPLPIENIVGRSMFRYWPPSKVSDSDTLRKLPPRNKSVAIS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03349 638 MobiDBLite consensus disorder prediction 618 638 - -
Vimu10g03349 638 SUPERFAMILY LexA/Signal peptidase 474 619 IPR036286 -
Vimu10g03349 638 MobiDBLite consensus disorder prediction 162 184 - -
Vimu10g03349 638 PRINTS Bacterial leader peptidase 1 (S26A) family signature 532 544 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g03349 638 PRINTS Bacterial leader peptidase 1 (S26A) family signature 473 489 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g03349 638 PRINTS Bacterial leader peptidase 1 (S26A) family signature 576 595 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g03349 638 NCBIfam signal peptidase I 459 615 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g03349 638 MobiDBLite consensus disorder prediction 162 182 - -
Vimu10g03349 638 Pfam Signal peptidase, peptidase S26 457 614 IPR019533 GO:0004252|GO:0006465
Vimu10g03349 638 FunFam Peptidase/ serine-type peptidase 482 613 - -
Vimu10g03349 638 CDD S26_SPase_I 476 608 IPR019533 GO:0004252|GO:0006465
Vimu10g03349 638 Gene3D Umud Fragment, subunit A 470 627 - -
Vimu10g03349 638 PANTHER SIGNAL PEPTIDASE I 422 621 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vimu10g03349 638 ProSitePatterns Signal peptidases I signature 3. 581 594 IPR019758 GO:0004252|GO:0016020
Vimu10g03349 638 ProSitePatterns Signal peptidases I serine active site. 482 489 IPR019756 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03349 Vimu-Chr10 43579804 43590315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03349 485 615 MADS-box Gene Family AT1G29960 33.835 8.92e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03349 K03100 - gmx:100817525 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03349 10 43579804 43590315 Vimu10g03349 10 43579804 43590315 ECH