Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03318 ATGGTGGCAGCATCCGCATACGAGGAGAGTCGTCGCAAGAGAGTAGAGGAAAACAGAAAGAGAATGGAAGCTCTCAATCTTCCTCTCCTCTCTCGAGCTCTTCACAAATCCCCTTCTCCCAAATCTTCTCCGTTAAAATCATTCAAGAAAAGCAGGACCACCCAAAAAGAGTTAGTTGTAGTGAGAAGGTCTGGTCGTCTGGCGAACTTGCCTTCCCCTGTTTACAAAGAAGAAATGCCTATTGATCGCGTTTCTATACCTAGAAGATGTATTAGCAATAGGCACAGAGATCTTAGTAATAGAGTATACGCCTCAGATGAAGCTAGGATGGAAGCATTAGAACAAGCAGAAAATTTAATGTCGGGTTTAAAATCTGATATCCCAAGCTTCATAAAATCTATGCTCCAATCTCATGTCAGTGGAGGGTTTTGGCTGGGCCTTCCAGTTCATTTTTGCAAGAGCAATCTTCCAAAAGGAGACGAAGTGATGACTTTGATTGATGAAGATGGGAATGAGTTTCCAACAATATATTTGAAACGCAAAACAGGACTTAGTGGGGGATGGAAAGGTTTTGCGGTTGCTCATGACCTAGCTGATGGGGACGCTTTAATTTTCCAATTAATCAACCGCACTACATTCAAGGTGACTCATCATATACCCTTGTGTTTAGTTTATTACATTTTTCATATTTTTGAATTA 699 0.4106 MVAASAYEESRRKRVEENRKRMEALNLPLLSRALHKSPSPKSSPLKSFKKSRTTQKELVVVRRSGRLANLPSPVYKEEMPIDRVSIPRRCISNRHRDLSNRVYASDEARMEALEQAENLMSGLKSDIPSFIKSMLQSHVSGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEFPTIYLKRKTGLSGGWKGFAVAHDLADGDALIFQLINRTTFKVTHHIPLCLVYYIFHIFEL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03318 233 MobiDBLite consensus disorder prediction 7 23 - -
Vimu10g03318 233 SMART B3_2 130 221 IPR003340 GO:0003677
Vimu10g03318 233 CDD B3_DNA 128 216 IPR003340 GO:0003677
Vimu10g03318 233 Pfam B3 DNA binding domain 130 219 IPR003340 GO:0003677
Vimu10g03318 233 ProSiteProfiles B3 DNA-binding domain profile. 130 221 IPR003340 GO:0003677
Vimu10g03318 233 Gene3D - 104 219 IPR015300 -
Vimu10g03318 233 SUPERFAMILY DNA-binding pseudobarrel domain 124 216 IPR015300 -
Vimu10g03318 233 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 219 IPR044837 -
Vimu10g03318 233 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03318 Vimu-Chr10 43353490 43355120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03318 6 215 B3 DNA Binding Superfamily AT3G19184 53.738 2.63e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu10g03318 B3 5.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03318 - - gmx:100797091 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03318 10 43353490 43355120 Vimu10g03318 10 43353490 43355120 ECH