Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03316 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACTGAGAAGCCGGATGTTGTCCTTGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACACTGCTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTTGATGGCCATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTTTCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTGAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATTATAGATGGATGTGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATTTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGATCCATTGGTGATAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACTGCTGGAGGCAGGATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGCAATGGCCTTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCGGCACCACATATTGTGAAAGAAGCCGTGCATGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGATGTATATCCGCAGGAGAAGCCACCTACTTCTGGGACAACACAAAAGAAACCGATAAAAGGAAGGCTGAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTACATTGACAAACAATACCTTGAGCCAGATGTGGTACGGGAACTATACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTGGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTGTCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGGGAGGGTATTTCCATACACGTGGGTGCGTCTAATCCAGGAAGATTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAGGAGAAGAGAGAAGCCATGGAAGGGAAGCGAACATCAGGTATTTGTTTCATAGACTTAGCAGCGGAAGTGACTAATGAATTATCATGTAAATTTGCATATTGA 1329 0.4582 MSGLGERQTVPLSVLLKRELANEKTEKPDVVLVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGIYYLSADHRLDSNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTAGGRIIISSDGVWDALTAAMAFDCCRGMSAEVAAPHIVKEAVHAKGLRDDTTCIVIDVYPQEKPPTSGTTQKKPIKGRLKSIFRKKSSESSSYIDKQYLEPDVVRELYEEGSAMLSERLETKYPLCNMFKLFVCAVCQVEIKPGEGISIHVGASNPGRLRPWDGPFLCSSCQEKREAMEGKRTSGICFIDLAAEVTNELSCKFAY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03316 442 SMART PP2C_4 19 293 IPR001932 -
Vimu10g03316 442 CDD PP2Cc 40 295 IPR001932 -
Vimu10g03316 442 Pfam Protein phosphatase 2C 59 278 IPR001932 -
Vimu10g03316 442 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Vimu10g03316 442 FunFam probable protein phosphatase 2C 12 34 301 - -
Vimu10g03316 442 SMART PP2C_SIG_2 48 295 IPR001932 -
Vimu10g03316 442 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Vimu10g03316 442 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
Vimu10g03316 442 Gene3D - 22 303 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03316 Vimu-Chr10 43342480 43346727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03316 1 422 PP2C-type Phosphatase Gene Family AT1G47380 76.777 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03316 - - gmx:100796959 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03316 10 43342480 43346727 Vimu10g03316 10 43342480 43346727 ECH