Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03309 ATGGTGGCAGTAGCAGTAGGAAGAGGCCTTCCTATTCAAACCCGCTCTTTATTCAATAGTAAGAGCATAGATAGAGCTTCACCAGCAGGAAGAGTCTCGTGGCTTGGGCATTCTGCTGCTGTCACTCCACGTTATAGACAAACTTGTGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCTGAAAACTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCCCGCTTTGCAATGCTTGGGGTATTGGGAATTCTTGTGACAGATCTGCTTCGTGTCACTGGAGTTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACACAGACACTCTTCATTGTTCAACTACTTTTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAGGCTAAAGAGGGGTCCTTCTTTGGACTGGAAGCTTCACTGGAAGGCTTAGAACCAGGGTACCCAGGAGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGATTCGAAGCTTAAAGAGATTAAAAATGGTCGACTTGCAATGGTGGCAATGGTTGGCTTCTTTGTGCAAGCTTCGGTGACTCACGTTGGACCAATTGACAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCATTGCAAATTCTAGTTCTTAG 795 0.4591 MVAVAVGRGLPIQTRSLFNSKSIDRASPAGRVSWLGHSAAVTPRYRQTCVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPENLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGVSKIPVWFEAGAVKYDLANTQTLFIVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDSKLKEIKNGRLAMVAMVGFFVQASVTHVGPIDNLVEHLSNPWHKTIIQTIANSSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03309 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 45 261 IPR001344 GO:0009765|GO:0016020
Vimu10g03309 264 Gene3D Chlorophyll a/b binding protein domain 56 264 - -
Vimu10g03309 264 FunFam Chlorophyll a-b binding protein, chloroplastic 56 263 - -
Vimu10g03309 264 Pfam Chlorophyll A-B binding protein 64 232 IPR022796 -
Vimu10g03309 264 SUPERFAMILY Chlorophyll a-b binding protein 50 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03309 Vimu-Chr10 43297259 43306075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03309 47 256 Chloroplast and Mitochondria Gene Families AT3G61470 45.972 1.26e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03309 K08911 - gmx:100804934 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03309 10 43297259 43306075 Vimu10g03309 10 43297259 43306075 ECH