Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03303 ATGAATTTCAAGAGCTTCGGGAATGAAGCTGGTGGCGACGGAGGAGGGAGACCGGTGGGGAACTTCTCCCTCACGCGGCAGCCGTCGGTGTACTCGCTGACGTTCGACGAGTTCATGAACAGCATGGGAGGTTCCGGGAAGGACTTTGGCTCCATGAACATGGACGAGTTGCTCAAGAACATTTGGACGGCGGAGGAGGTTCAGACAATGGCTTCGGCGGGCGTTGCCGCCGAGGACGTAGGAGCCGGCGTCAGCCATTTGCAACGCCAGGGGTCGCTTACGCTGCCGCGGACTCTGAGCCAGAAGACAGTGGATGAGGTTTGGAAGGACATTTCGAAGGATTACGGTGGGCACGGCGGGCCCAATCTTGCACAGACGCCGAGACAGCCCACTTTGGGAGAGATGACTTTGGAGGAGTTTCTGGTCAGAGCTGGTGTTGTTAGAGAAGACGCGAAGCCAAACGACGGCGTTTTCATGGATCTGGCTCGTGCAGGGAATAACAACGGTTTGGGGTTTGGGTTCCAGCAGATGAACAAGGTTTCTACTGCTACCGGTTTGATGGGTAACCGGTTGAACAATGATCCACTGGTGGGACTTCAGTCTTCTGCCAATTTGCCTTTGAGTGTTAATGGGGTGAGATCGTCCAGTCAGCAGCCACAGATGCAGAGTCCACAGTCTCAGCAGCAGCATCAGCAGCAGATATTTCCTAAGCAGAGTCCTATGTCTTATGCAGCTGCTCAGATGCCCCAGGGAATGGTGAGGGGTGGGATTGTGGGACTCGGTGGTGATCAGGGTTTGAGCGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGTCAGTTCATGTTGCTACTGGGTCTCCTGCTGCTAACCAAATATCCGGTGATAAGATGACCAAGAGCAATGGTGATACCTCGTCTGTCTCACCGGTTCCTTACGTCTTTAACGGAGGCATGAGGGGGAGGAAGAGTGGAGGAGCTGTGGAGAAGGTGATAGAGAGGAGGCAGAGAAGGATGATAAAGAACAGAGAGTCAGCTGCCAGGTCACGGGCACGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACCAGGAACTTGTGAAAAAACAGGCTGAAATCATGGAAATTCAGAAAAATCAAGTAAGTGTTAAGGAAATGATGAATTTGCAACGAGAAGTCAAGAGAAGACGCCTCAGACGAACACAAACTGGTCCG 1245 0.5261 MNFKSFGNEAGGDGGGRPVGNFSLTRQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVAAEDVGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDISKDYGGHGGPNLAQTPRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFMDLARAGNNNGLGFGFQQMNKVSTATGLMGNRLNNDPLVGLQSSANLPLSVNGVRSSSQQPQMQSPQSQQQHQQQIFPKQSPMSYAAAQMPQGMVRGGIVGLGGDQGLSVQGGGIGMVGLAPGSVHVATGSPAANQISGDKMTKSNGDTSSVSPVPYVFNGGMRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELVKKQAEIMEIQKNQVSVKEMMNLQREVKRRRLRRTQTGP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03303 415 SMART brlzneu 332 400 IPR004827 GO:0003700|GO:0006355
Vimu10g03303 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 334 385 IPR004827 GO:0003700|GO:0006355
Vimu10g03303 415 MobiDBLite consensus disorder prediction 292 322 - -
Vimu10g03303 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 339 354 IPR004827 GO:0003700|GO:0006355
Vimu10g03303 415 CDD bZIP_plant_BZIP46 336 390 - -
Vimu10g03303 415 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 415 IPR043452 GO:0003700|GO:0045893
Vimu10g03303 415 Gene3D - 334 391 - -
Vimu10g03303 415 MobiDBLite consensus disorder prediction 207 238 - -
Vimu10g03303 415 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g03303 415 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 334 391 - -
Vimu10g03303 415 Pfam bZIP transcription factor 336 385 IPR004827 GO:0003700|GO:0006355
Vimu10g03303 415 MobiDBLite consensus disorder prediction 292 314 - -
Vimu10g03303 415 SUPERFAMILY Leucine zipper domain 336 384 IPR046347 GO:0003700|GO:0006355
Vimu10g03303 415 Coils Coil 352 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03303 Vimu-Chr10 43260259 43264112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03303 24 368 bZIP Transcription Factor Family AT1G45249 52.255 1.36e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g03303 bZIP_1 7.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03303 K14432 - gmx:100819313 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03303 10 43260259 43264112 Vimu10g03303 10 43260259 43264112 ECH