Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03301 ATGGACACTGTGGAGCAGTTAAAGCCGGAGGAGGAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATGGTGACACCAACATCATGGATGGTTTTCATCCCCAAGAAGGCTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTAGCAGATTTACTAGATAATAACCCTCCCAGCCCCTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTCTAATCTCTTTCTCCGACAACACCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAGCCGAGGGTGCAACTGCAACTGCAACTGCAAACCCTTACGGTGACAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGACACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCTGCTAACAATATTAGGCCACTTGTCGGTATTAATGCACCAGGGATAGGATTTCCCGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACTTCCAGTTCCAATTTCACCCCTTATTTTCCTTTACCTAATACCTATGATTAA 822 0.5024 MDTVEQLKPEEEQQQQMDITTMMMQHLPQFSEPYGDTNIMDGFHPQEGFYSNNNNIRSGSTMPLADLLDNNPPSPLPWSSYSFTHLIPSPTSSALISFSDNTNNPTPIMLQQTPAEGATATATANPYGDKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPLVGINAPGIGFPVAMSGSIRTATTSSSNFTPYFPLPNTYD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03301 273 Pfam Helix-loop-helix DNA-binding domain 177 216 IPR011598 GO:0046983
Vimu10g03301 273 SMART finulus 173 222 IPR011598 GO:0046983
Vimu10g03301 273 CDD bHLH_AtIND_like 168 224 - -
Vimu10g03301 273 Gene3D - 166 233 IPR036638 GO:0046983
Vimu10g03301 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Vimu10g03301 273 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 256 IPR045843 GO:0003700|GO:0006355
Vimu10g03301 273 FunFam BHLH transcription factor 170 233 - -
Vimu10g03301 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03301 Vimu-Chr10 43245765 43246586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03301 110 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 74.194 2.37e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g03301 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03301 - - vum:124831293 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03301 10 43245765 43246586 Vimu10g03301 10 43245765 43246586 ECH