Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03299 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTAATATGAACTCACCTTATGTGAATTCCATTGATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGCAATACCCCAAATGAGATTAACAATAATGAGCCGAAACGAGAACTTGGATGGACATCAGCCATTACTGCTGGTGCGTTACCTGGTGCAAGGCTAGAAGAAAGGGGCCTTGAACCAACCAATACACTTTCTCTAGACAATGATAACACAAGTCCTGTGTACATGCGCAGTCCTGAGTCTCGTTTAATGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGATAGTGGTGATGATAATAGTCAACATCTGGAGCTCCCTAACTTACACATGTCTAGTGGGTCATCAAATGAGTGCTTGCCATCTAATGTTGGATCTGGTTCTTTTTTGCTTCCTTCTGCAAATAGTGGCTTCCTGGTCGAAGGTTCTGATGGCAGGCCAAGTTCTCTTGATACTCGGCGAGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCTCAGAGCAGGTTAATGCAAGACTTGGCCTGGGAATGGGGAATGAAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGAGGTTAAATCCTTTGAGTCAACAAAATTCTGTTCCTCCCGCTGCATTCTCAACTGGGAGCACGATTAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCCGTTGATAATTCTCTGAACTTGAGATCAGCTCCACCAATAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATGCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAACTCAAGGCGAATGTCTAGAAATATTTTGGAACATCCCGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTCTCTTCATCACGGACTGGATCCAATCCAGCTACCAACCCCTCTCCTGCCTCAAATTGGGTATCTCGTCCTAATCCTCAACAACATCCACGGAGGCTGTCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATCCTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGTACTGCCCTTTCAAGCTCTGAACCGAGGCCATTATCATCTGGGACTGGGGCAAATCCAAGATCATCTCCATGGATGGATAGACAAGGGGAAAGTGAATTCGGAATTCCTTATTCACTGCGCGCTCTGGATGTTGCAAGTGAAGGGAGTAGGCTAGTATCCGAGCTCCGGAATGTGTTGGGCATTGTGCGTAGAGGTGGGAATGTGCGATTCGAGGTTAGTTATTCTAAATTAATGGCCTACAACGATGTTGATTTATTTGTGATTTTGTTTGGACATACACTGGGATTCTGGAAGGATGTTGTGATCCTTGATCATCAGTCATTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAGCCGTATTGAAATTCTTGAAACAGAAAAAGCACTCGGTTGAAAGAGAATCTCAGATTGACGCAGAACCCTGTTGTGTTTGTCAGGAAGATTATGGTGATGGAGATGATATCGGAACGCTTGACTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2196 0.4349 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGNMNSPYVNSIDHEWQNLSGWSLGEPSSSNTPNEINNNEPKRELGWTSAITAGALPGARLEERGLEPTNTLSLDNDNTSPVYMRSPESRLMSQNLNLNAGLADSGDDNSQHLELPNLHMSSGSSNECLPSNVGSGSFLLPSANSGFLVEGSDGRPSSLDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGNEASENVPDSNIAGSSESFHRNFRLRLNPLSQQNSVPPAAFSTGSTIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHASNPVICADRDQEDANSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVSSSRTGSNPATNPSPASNWVSRPNPQQHPRRLSEYVRRSLFSPGSDPIGNPSNAYSSLRTALSSSEPRPLSSGTGANPRSSPWMDRQGESEFGIPYSLRALDVASEGSRLVSELRNVLGIVRRGGNVRFEVSYSKLMAYNDVDLFVILFGHTLGFWKDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEAVLKFLKQKKHSVERESQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03299 731 ProSiteProfiles Zinc finger RING-type profile. 684 725 IPR001841 -
Vimu10g03299 731 SMART ring_2 684 724 IPR001841 -
Vimu10g03299 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 728 IPR013083 -
Vimu10g03299 731 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 168 729 IPR045191 GO:0061630
Vimu10g03299 731 MobiDBLite consensus disorder prediction 119 134 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 221 240 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 432 478 - -
Vimu10g03299 731 FunFam E3 ubiquitin-protein ligase MBR2 652 729 - -
Vimu10g03299 731 Pfam Ring finger domain 684 725 IPR001841 -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 432 536 - -
Vimu10g03299 731 SUPERFAMILY RING/U-box 671 727 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 495 534 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 109 134 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 73 93 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 310 339 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 149 178 - -
Vimu10g03299 731 MobiDBLite consensus disorder prediction 199 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03299 Vimu-Chr10 43197534 43202532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03299 1 731 C3H Transcription Factor Family AT2G15530 31.043 1.99e-68 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03299 - - gmx:100783014 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03299 10 43197534 43202532 Vimu10g03299 10 43197534 43202532 ECH