Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03297 ATGAATTCCACTGTCGTTACAAACGTTTCAGAATGTTTTATCAAGCCGTTTGGCCCAGCTCAAGAATCCAACCGAATATGCAATTTAACACCTTGGGATATTCGTATGCTGTCTATGGATTACATCCAGAAGGGTCTACTCTTCAAGAAACCTGCAACACTTGTTCATCGACAAGATTTCATAGAAAATCTGTTGGAGAAGCTCAAGCACTCTCTTTCTCTCACCCTCTTCCATTTTTATCCATTGGCAGGCCACCTTGTCACAAACAAAGACCCTTCCACTTATACTATTTTCGTTGATTGCAACAACAGTCATGGAGCTAGATTCATCTATGCAACTTCGGATTTGACAATATTTGACATACTCTCCCCTGTTGACGTCCCACTCGTTGTTCAATCATTCTTTGGTCATCAAAAAGCTGTCAACCATGATGGTCACACCATGCCTCTGTTGTCCGTTAAAGTCACTGAACTATTGGATGGTGTTTTCATAGGCTGTTCTATGAACCACGCCATAGGCGATGGAACTTCTTATTGGAATTTCTTTAATACATGGTCTGAGATCTTTCAAGCTCATGCTCAAGGCCATGAATACGGTGTTCCCATTTCACGCCACCCCATTCATAACCGGTGGTTTCCTGATGGTTGTGATCCATTAATCAATCTTCCCTTCAAACATCACGACGAGTTTATTACCAGATTTGAAGCACCCGAGCTGAGAAAGAGAATCTTCCATTTTTCAGCAGAGTCAATAGCAAAACTGAAAGCAAGGGCTAACTCAGAGTCCAAGACCACCAAAATCTCTTCGTTCCAATCCTTATCAGCTCATGTATGGAGATGCATAACACGCGCTCGTCAGCTGCCACATGATGAGGTAACTAGCTGCATATTGGCCATGAATAATCGACCAAGAATGGAGCCGCCTCTGCCACATGAATACTTTGGAAACTGTATTGGTGTGGTGAGTGCGGGGACAACAGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCTGCATGGAAGGTGCACCTGGCCGTTGCAAACCAAAACGACAGAGCAGTGCGACACGAGGTGAAAGAGTGGTTACAACGCCCTATGGGGTACCAACTTGGTGTGCACTTTGATTCGCGTAGTGTGACGATATCAAGTTCGCCCAGGTTTGACATGTATGGGAATGAATTTGGGATGGGAAAAGCTGCTGCAGTTCTGAGCGGATATGCCAACAAATTTGATGGGAATGTGACTTCATATCCAGGATCCGAAGGAGGGGGGAGCATAGATTTGGAAGTGTCCATTTCGCCCGAAGCAATGAGCTTACTAGAATCGGATGAGGAGTTTATGGAAGTTGTTTCTGTGGCCATTTCCCTACACTAG 1374 0.4469 MNSTVVTNVSECFIKPFGPAQESNRICNLTPWDIRMLSMDYIQKGLLFKKPATLVHRQDFIENLLEKLKHSLSLTLFHFYPLAGHLVTNKDPSTYTIFVDCNNSHGARFIYATSDLTIFDILSPVDVPLVVQSFFGHQKAVNHDGHTMPLLSVKVTELLDGVFIGCSMNHAIGDGTSYWNFFNTWSEIFQAHAQGHEYGVPISRHPIHNRWFPDGCDPLINLPFKHHDEFITRFEAPELRKRIFHFSAESIAKLKARANSESKTTKISSFQSLSAHVWRCITRARQLPHDEVTSCILAMNNRPRMEPPLPHEYFGNCIGVVSAGTTVGELLENDLGWAAWKVHLAVANQNDRAVRHEVKEWLQRPMGYQLGVHFDSRSVTISSSPRFDMYGNEFGMGKAAAVLSGYANKFDGNVTSYPGSEGGGSIDLEVSISPEAMSLLESDEEFMEVVSVAISLH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03297 457 Gene3D - 227 442 IPR023213 -
Vimu10g03297 457 Gene3D - 8 222 IPR023213 -
Vimu10g03297 457 FunFam Tryptamine hydroxycinnamoyl transferase 226 443 - -
Vimu10g03297 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
Vimu10g03297 457 Pfam Transferase family 6 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03297 Vimu-Chr10 43152967 43154340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03297 48 441 Monolignol Biosynthesis Gene Families AT5G48930 27.529 3.61e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03297 - - vum:124831304 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03297 10 43152967 43154340 Vimu10g03297 10 43152967 43154340 ECH