Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03296 ATGAACGTGATGGCCATAAAGCTGGAATTTGATTGGTCCTCTTACCTAATATTGATGATGAAAACTGACTATTACCTGCTTTACCAGCATTCTTTTTCATACGACGCAAACATCCGCGATTCAGTTCAGACATCTCTAAGATATCTGCGAAACAACTCCGAAATTTTGGTGAGAGTTTGGATGATGAATTCCACTGTCGTTACAAACGTTTCAGAATGTTTTATCAAGCCGTTTGGCCCAGCTCAAGAGTCCAACCGAATATGCAATTTAACACCTTGGGATATTGGTATGCTGTCTATGCATTACATCCAGAAGGGTCTACTCTTCAAGAAACCTGCAACACTTGTTCATCGACAAGATTTCATAGAGAATCTGTTGGAGAAGCTCAAGCACTCTCTTTCTCTCACCCTCTTCCATTTCTATCCATTGGCAGGCCACCTTGTCACAAACAAAGACCCTTCCTTTTATACTATTTTCGTTGATTGCAATGATAGTCATGGAGCTAGATTCATCTATGCAACTTCGAATTTGACAATATTTGACATACTCTCCCCTGTTGACGTCCCACCCGTTGTTCACTCATTCTTTGATCATCACAAAGCTGTCAACCATGATGGTCACACCATGCCTCTGTTGTCCGTTAAAGTCACTGAACTATTGGATGGTGTTTTCATAGGCTGTTCTATGAACCACGCCATAGCCGATGGAACTTCTTATTGGAATTTCTTTAATACTTGGTCTGAGATCTTTCAAGCTCATGCTCAAGGCCATGAATACGGTGTTCCCATTTCACGCCACCCCATTCATAACCGGTGGTTTCCTGATGGTTGTGATCCATTAATCAATCTTCCCTTCAAACATCACGACGAGTTTATTACCAGATTTGAAGCACCCCAGCTGAGAGAGAGAATCTTCCATTTTTCAGCAGAGTCAATTGCAAAACTGAAAGCAAGGGCTAACTCAGAGTCCAAGACCACCAAAATCTCTTCGTTCCAATCCTTATCAGCTCATGTATGGAGATGCATAACACGCGCTCGTCAGCTGCCACATGATGAGGTAACTAGCTGCAAATTGGCCATGAATAATCGAGCAAGAATGGAGCCGCCTCTGCCACATCAATACTTTGGAAACTGTATTAGCGTGGTGAGTGCGGGGACAACAGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCTGCATGGAAGGTGCGCCTGGCCGTTGCAAACCAAAACGACAGAGCTGTGCGACACGCGGTGAAAGAGTGGTTACAACGCCCTGTGGTGTACCAACTTGGTGTGCACTTTGATTCGAGTAGTGTGACGATGTCAAGTTCGCCCAGGTTTGACATGTATGGGAATGAATTTGGGATGGGAAAAGCTGCTGCAGTTCTGAGCGGATATGCCAACAAATTTGATGGGAATGTGACTTCATATCCAGGATACGAAGGAGGGGGGAGCATAGATTTGGAAGTGTCCCTTTCCCCCGATGCAATGAGCTTACTAGAATCGGATGAGGAGTTTATGGAATCTGTTTCTGTGGCCAATTCCCTACACTGGCGACTTTGTTGA 1569 0.4442 MNVMAIKLEFDWSSYLILMMKTDYYLLYQHSFSYDANIRDSVQTSLRYLRNNSEILVRVWMMNSTVVTNVSECFIKPFGPAQESNRICNLTPWDIGMLSMHYIQKGLLFKKPATLVHRQDFIENLLEKLKHSLSLTLFHFYPLAGHLVTNKDPSFYTIFVDCNDSHGARFIYATSNLTIFDILSPVDVPPVVHSFFDHHKAVNHDGHTMPLLSVKVTELLDGVFIGCSMNHAIADGTSYWNFFNTWSEIFQAHAQGHEYGVPISRHPIHNRWFPDGCDPLINLPFKHHDEFITRFEAPQLRERIFHFSAESIAKLKARANSESKTTKISSFQSLSAHVWRCITRARQLPHDEVTSCKLAMNNRARMEPPLPHQYFGNCISVVSAGTTVGELLENDLGWAAWKVRLAVANQNDRAVRHAVKEWLQRPVVYQLGVHFDSSSVTMSSSPRFDMYGNEFGMGKAAAVLSGYANKFDGNVTSYPGYEGGGSIDLEVSLSPDAMSLLESDEEFMESVSVANSLHWRLC 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03296 522 FunFam Tryptamine hydroxycinnamoyl transferase 287 504 - -
Vimu10g03296 522 Gene3D - 288 503 IPR023213 -
Vimu10g03296 522 Gene3D - 62 283 IPR023213 -
Vimu10g03296 522 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 70 509 - -
Vimu10g03296 522 Pfam Transferase family 67 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03296 Vimu-Chr10 43143547 43145115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03296 109 502 Monolignol Biosynthesis Gene Families AT5G48930 27.765 1.03e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03296 - - vum:124831304 951.044