Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03295 ATGAATTCCCCCGTCGTTCGAATCGTTTCAGAATGTTTTGTCAAGCCATCGTGCCAAGCTCAAGAATCAGATCGAATCTGCCATTTAACACCTTGGGATATTGCTATGCTGTCTTTGCACCACATCCAGAAGGGTCTACTCTTCCAGAAGCCAAAAACACTTGTTGATCAACATCATTTCATACAGAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTAGCCCTCTTCCATTTCTATCCATTGTCTGGTCGCCTTGTCACCCACAAAACCGAAGACCCTTCATCTTATACTATTTTTGTTGATTGCAGCAACAGCAGAGGAGCTAGATTCATCCATGCAACTTTGGATATGACAATATCTGACATCCTCTCCCCCGTTGATGTCCCTCCTATTGTGAACTCATTCTTTGACCTCCACAAAGCAGTCAACCATGATGGTCATACCATGCCACTCTTGTCGATTAAAGTTACTGAGCTAGTGGACGGTGTTTTCATAGGTTGTACCATGAACCACAATATCGCTGATGGCACTTCTTATTGGAATTTCTTCAATGCATGGTCTGAGATCTTTCAAGCTCAAGCTGAAGGGAATGAACACGATGTTCCGATTTCATGTCATCCTATTCATAACCGGTGGTTTCCAGATGGTTGCGGCCCATTAGTCAACCTTCCCTTCAAACATCACGACGAGTTTATTAGAAGATTTGAGCCACCTATTCTGAGGGGGAGAATCTTCCACTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAGGGCAAATTCAGAGTCCAAAACCACAAAAATCTCTTCGCTCCAATCCTTATCAGCTCATGTTTGGAGATGCGTAACACGGGCACGTCAGACGGCACACGGTGAGAGAACAAGTTGCAAATTGGCCATAAATAACCGGTCAAGAATGGCACCGCCTCTGCCGGCCGAGTACTTTGGAAGTGCTGTTAGTGTGGTGAGCGCAGAGAGCACGGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCTGCATGGAAGGTGCACGTGGCTGTTGCCAACTATAACGACAGAGTGGTGAGAGACATGGTGAAAGAGTGGTTGCAGCATCCAGTGATTTACCAACATGGTGTGATGGTTGACCCCAGTTGTGTGATGATATCAAGTTCTCCCAGGTTCAACGTGTATGGAAATGAATTTGGAATGGGAAAAGCGGTGGCAGTTCTCAGTGGGTATGCCAACAAATTTGACGGAGACGTGATCGCACATCCAGGACGTGAAGGAGGAGGAAGCATAGATTTTGAAGTCTCCCTTTCCCCTGATGTAATGTGTGCACTGGAATCAAATCAGGAGTTCATGGAAGCTGTTTCCGTGCCCAATCTTCTGCACAACCCAGTTCGTTGA 1392 0.4583 MNSPVVRIVSECFVKPSCQAQESDRICHLTPWDIAMLSLHHIQKGLLFQKPKTLVDQHHFIQNLLEKLKHSLSLALFHFYPLSGRLVTHKTEDPSSYTIFVDCSNSRGARFIHATLDMTISDILSPVDVPPIVNSFFDLHKAVNHDGHTMPLLSIKVTELVDGVFIGCTMNHNIADGTSYWNFFNAWSEIFQAQAEGNEHDVPISCHPIHNRWFPDGCGPLVNLPFKHHDEFIRRFEPPILRGRIFHFSAESIAKLKARANSESKTTKISSLQSLSAHVWRCVTRARQTAHGERTSCKLAINNRSRMAPPLPAEYFGSAVSVVSAESTVGELLENDLGWAAWKVHVAVANYNDRVVRDMVKEWLQHPVIYQHGVMVDPSCVMISSSPRFNVYGNEFGMGKAVAVLSGYANKFDGDVIAHPGREGGGSIDFEVSLSPDVMCALESNQEFMEAVSVPNLLHNPVR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03295 463 Gene3D - 231 445 IPR023213 -
Vimu10g03295 463 Gene3D - 5 220 IPR023213 -
Vimu10g03295 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 450 - -
Vimu10g03295 463 FunFam Tryptamine hydroxycinnamoyl transferase 228 446 - -
Vimu10g03295 463 Pfam Transferase family 6 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03295 Vimu-Chr10 43141523 43142914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03295 66 443 Monolignol Biosynthesis Gene Families AT5G48930 27.342 1.97e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03295 - - vum:124831304 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03295 10 43141523 43142914 Vimu10g03295 10 43141523 43142914 ECH