Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03294 ATGGTTACCCATGGCTTTCGTCGCATTTCCGAATGCTTCGTCCAGCCACACCGCCCCACTGAAATGTCAAACCAAATATGCCATTTAACACCTTGGGATATTGCAATGTTGAGTAGCCACTATATCCAGAAGGGTCTACTTTTCAAGAAGCCTTCAACACTTGTTCATCCAGATCATTTCACAGACAAACTGTTGGAGAAACTCAGACACTCTCTTTCTCTCACCCTCTCCCATTTCTATCCATTAGCGGGCCGTTTCGTCACCCACAAAACGCAAGACCCTCCCTCTTATGCTGTTTTCATTGATTGCAAAAACAGTGATGGAGCAAAATTCATCTATGCAACCTTGGACATGACCATATCCGACATACTCTCTCCCATTGACGTCCCACCCATTGTCCACTCATTCTTTGACCACCACAAAGCAGTCAACCATGATGGTCACACCATGCCATTGTTGTCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATGCTGTTGGTGATGGAACTTCTTACTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCTCATGATCAAGGACATGAATATGAAGTTTCCATCTCACAGCAACTCATTCACAATAGATGGTTTCCGAATGATTGCAGCCCACTAATCAATCTTCCTTTCAAACATCACGACGAGTTTATCAGAAGATTTGAAGCGCCCTTTCTGAGAGAGAGAGTCTTCCACTTTTCGGCGGACTCTATTGCGAAACTGAAAGCAAAAGCCAACTCAGAGTGCAATACGACAAAAATCTCTTCATTCCAGTCATTATCAGCACTTGTTTGGAGAAGCATAACTCGAGCCCGCTCCCCACCGTACGAGCAAAGAACAAGTTGCAAGTTGGCCATAAACAATCGACCAAGAATGGGAGCGGTGCCTGAGGAATACTTTGGAAACTCAATTTATGTGGTGAGTGCAGAAACAACGACAGGGGAATTGGTAGAAAATGGTCTAGGATGGGCAGCGTGGAAGTTGCACTTGACTGTTGCAAAGTATAATGAGAGAGTGGTACTGGAATTGCTGAAAAAGTGGTTAGAATGTCCATTGATATATGACCTTGGTAGTTTCTTTGACCCCTACTGCGTGATGATGGGTAGCTCGCCCAGGTTTAGCGTGTATGGAAATGAATTTGGAATGGGAAAAGCAGTGGCCGCTAGAAGTGGGTATGCTAACAAGTATGATGGGAAAGTGACATCATATCCAGGTCGTGAAGGAGGGGGGACCATTGATTTGGAAGTTTGCCTTTCGCCAGATAATATGAGAGCGCTCGAATCGGATCAAGAGTTCATCAATGCAACTTCTCACTCCAGTCTCTTCTACTAG 1377 0.4452 MVTHGFRRISECFVQPHRPTEMSNQICHLTPWDIAMLSSHYIQKGLLFKKPSTLVHPDHFTDKLLEKLRHSLSLTLSHFYPLAGRFVTHKTQDPPSYAVFIDCKNSDGAKFIYATLDMTISDILSPIDVPPIVHSFFDHHKAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHAVGDGTSYWNFFNTWSQIFQAHDQGHEYEVSISQQLIHNRWFPNDCSPLINLPFKHHDEFIRRFEAPFLRERVFHFSADSIAKLKAKANSECNTTKISSFQSLSALVWRSITRARSPPYEQRTSCKLAINNRPRMGAVPEEYFGNSIYVVSAETTTGELVENGLGWAAWKLHLTVAKYNERVVLELLKKWLECPLIYDLGSFFDPYCVMMGSSPRFSVYGNEFGMGKAVAARSGYANKYDGKVTSYPGREGGGTIDLEVCLSPDNMRALESDQEFINATSHSSLFY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03294 458 Pfam Transferase family 13 447 - -
Vimu10g03294 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
Vimu10g03294 458 Gene3D - 234 444 IPR023213 -
Vimu10g03294 458 Gene3D - 9 230 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03294 Vimu-Chr10 43138374 43139750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03294 66 442 Monolignol Biosynthesis Gene Families AT5G48930 26.536 6.65e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03294 - - vum:124831304 929.858