Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03291 ATGTCCTGTTTCAGAACTGAACAAAGGAAACAGATACCCTGCATAATGAGTAACCTCGCCGTTCGACGTATTTCAGAATGCTTTGTGAAGCCTCAATTCTCCAACCAAATCTGCAATCTAACTCCTTGGGATATTGTTTTGCTGTCTACAAACTATATCCAGAAGGGTCTTCTCTTCAAGAAACCTGCGACCCTTATTGATGAACATCATTTCATACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTACCCTCTTCCATTTTTATCCGTTGTCTGGTCGCCTTGTCACCCACAAAACCCAAAACCCTCCCTCTTATACTCTTTCTATTGATTGCAACAACAGTGACGGTGCTAGATTCATTCATGCAACTCTGGAAATGACTATAGCTGATATCCTCTCCCCCTGTGACGTCCCACCAATTGTTCAATCGTTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAATTGATCGATGGTGTTTTCATAGGTTGTTCAATGAATCACTCTCTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTCAAGCACAATCTCAATCTGAAAACCATGAATACGATGTTCCCATCTCACGCCAACCCATTCACGATCGTTTGTTTCCACATAATTGTAGTCCACCAATATCTCTTCCTTTCAAACATCATGACGAGTTTATTTGGAGATCTGAAACACCCTTGCTGAGAGAGAGATTTTTCCACTTTTCAGCAGAATCAATTGCCAAACTGAAAGCAAAGGCCAACTCAGAATCTAATACCACAAAAATCTCTTCCTTCCAATCATTATCAGCACTTGTTTGGAGATCCATAACTCGTGCGCGCTCCCCACCGTCTGACCAGAAAACAACATGCAGATTAGCCGCAAACAGTCGATCAAGAATGAAGCCGCCTGTGGCAGAAGAATACTTTGGAAACTGCGTTCATGTAGTGAGTGCAGAAACGACAGCAGGGGAATTGCTTGAGAATGGTATAGGATGGGCAGCATGGAAGTTGCATGTGGCTGTTACAGACTTCAATGAAAGAGTGGTGGTAGAATTTCTGGAAGGGTGGTTAGATTCTCCTTTCATAATTCAAATGGGTCGTTACTTTGACCCGTATAGCTTGTTGATGGGTAGTTCGCCAAGGTTCAATATGTATGGATGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGTTATGCAAACAAATTTGATGGGAAGGTGTCGTCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTCGCCACACACAATGAGTGCTTTGGAATCAGACCAAGAGTTCATGAATGCAGTTACTGAGTTTCATCCCCTGTTGTTCTAG 1422 0.4332 MSCFRTEQRKQIPCIMSNLAVRRISECFVKPQFSNQICNLTPWDIVLLSTNYIQKGLLFKKPATLIDEHHFIQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTLSIDCNNSDGARFIHATLEMTIADILSPCDVPPIVQSFFDHHKAVNHDGHTMPLLSIQVTELIDGVFIGCSMNHSLGDGTSYWNFFNTWSQIFQAQSQSENHEYDVPISRQPIHDRLFPHNCSPPISLPFKHHDEFIWRSETPLLRERFFHFSAESIAKLKAKANSESNTTKISSFQSLSALVWRSITRARSPPSDQKTTCRLAANSRSRMKPPVAEEYFGNCVHVVSAETTAGELLENGIGWAAWKLHVAVTDFNERVVVEFLEGWLDSPFIIQMGRYFDPYSLLMGSSPRFNMYGCEFGMGKAVAARSGYANKFDGKVSSYPGREGGGSIDLEVCLSPHTMSALESDQEFMNAVTEFHPLLF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03291 473 Gene3D - 23 233 IPR023213 -
Vimu10g03291 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 24 463 - -
Vimu10g03291 473 Pfam Transferase family 33 462 - -
Vimu10g03291 473 Gene3D - 244 458 IPR023213 -
Vimu10g03291 473 FunFam Tryptamine hydroxycinnamoyl transferase 241 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03291 Vimu-Chr10 43121181 43122602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03291 27 456 Monolignol Biosynthesis Gene Families AT5G48930 26.444 5.75e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03291 - - vra:106761257 913.294