Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03290 ATGGTTACTCCTGTCGTTCGACGCATTTCAGAATGCTTCGTCAAACCGCAAGGTTTAACCCAAGATTCAAACCAAATATGCAATTTAACACCTTGGGATATCTCTATGTTGTCTGTGCACTATATCCAAAAGGGTCTACTCTTCAAGAAGCCTGAAACACTTGTTGATGAACACGATTTCGTACAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCACTCACCCTTTTTCATTTCTATCCATTGTCTGGTCGCCTTGTTACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTGTTGATTGCAAAAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATGACTATAGCTGATATCCTCTCCCCCTGTGACGTCCCACCAATTGTTCAATCGTTCTTTGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGCTGTTGTCCATCCAAGTCACTGAATTGATCGATGGTGTTTTCATAGGTTGTTCAATGAATCACTCTCTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTGAAGCACAACCTCAAGGCCAAGAATACGATGCTCACATTTTGCGCCAACCCATTCATAATCGCTGGTTTCCAAATAATTGCAGTCCACCAATCAATCTTCCTTTCAAACATCAGGACGAGTTTATCAGGAGGTATGAAGCGCCCTTGCTGAGAGAGAGAATCTTCCACTTTTCAGCAGAGTCGATAGGAAAACTGAAAGCAAAGGCAAACTCAGAGTCCAACAGTAATACTTGGAAAATCTCTTCATTCCAGTCATTATCAGCACTTGTTTGGAGATCAATAATTCGAGCATGCTCCCTACCATATGAGCAAAAAACACGTTTCAACTTAACTGCAAACAATCGGTCAAGAATGGAGCCACCTCTGCCTCATGAATACTTTGGAAACTCGGTTGATAAGTTGAGTGCGGAAACTACAGTTGGGGAATTACTTGAGAATGATCTAGGATGGGCTGCAGAGAAGTTGCACCTTGCTGTTACAAGGCACAACAACAGAGAGGTGTTGCATTCACTCCAAGAGTGGTTACAGTCTCCAGTGATCAAGCACACTAGTCAGCCTTTGGAGCCGTACGTTGTGTTGATAAGTAGCTCACCAAGGTTCAACATGTATGGGAGTGAGTTTGGAATGGGGAAAGCAGTGGCAGTGAGAAGTGGATATGCCAACAAATTTGATGGAAAGGTGACATCATTTCCAGGTCGTGAAGGAGGGGGAAGCATCGATTTGGAAATCTGCCTTTTACCACATATAATGACCTCTCTTGAATCAGACATTCAATTTATGAATGCTGTTTCCTAA 1368 0.4291 MVTPVVRRISECFVKPQGLTQDSNQICNLTPWDISMLSVHYIQKGLLFKKPETLVDEHDFVQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYTVSVDCKNSDGARFIHATLDMTIADILSPCDVPPIVQSFFDHHKAVNHDGHTMPLLSIQVTELIDGVFIGCSMNHSLGDGTSYWNFFNTWSQIFEAQPQGQEYDAHILRQPIHNRWFPNNCSPPINLPFKHQDEFIRRYEAPLLRERIFHFSAESIGKLKAKANSESNSNTWKISSFQSLSALVWRSIIRACSLPYEQKTRFNLTANNRSRMEPPLPHEYFGNSVDKLSAETTVGELLENDLGWAAEKLHLAVTRHNNREVLHSLQEWLQSPVIKHTSQPLEPYVVLISSSPRFNMYGSEFGMGKAVAVRSGYANKFDGKVTSFPGREGGGSIDLEICLLPHIMTSLESDIQFMNAVS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03290 455 Gene3D - 233 447 IPR023213 -
Vimu10g03290 455 Gene3D - 8 220 IPR023213 -
Vimu10g03290 455 Pfam Transferase family 9 450 - -
Vimu10g03290 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03290 Vimu-Chr10 43119010 43120377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03290 66 436 Monolignol Biosynthesis Gene Families AT5G48930 26.952 2.70e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03290 - - gmx:100787276 759.599