Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03289 ATGGCTGAACGTGCACGGCAATGCAAACCTTTGGCAGCTGAATGTTTTGTCAAGCCATCGTGCCAAGCTCAAGAATCAGATCGAATCTGCCATTTAACACCTTGGGATATTGCTATGCTGTCTTTGCACCACATCCAGAAGGGTCTACTCTTCCAGAAGCCAAAAACACTTGTTGATCAACATCATTTCATACAGAATCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTAGCCCTCTTCCATTTCTATCCATTGTCTGGTCGCCTTGTCACCCACAAAACCGAAGACCCTTCATCTTATACTATTTTTGTTGATTGCAGCAACAGCAGAGGAGCTAGATTCATCCATGCAACTTTGGATATGACAATATCTGACATCCTCTCCCCCGTTGATGTCCCTCCTATTGTGAACTCATTCTTTGACCTCCACAAAGCAGTCAACCATGATGGTCATACCATGCCACTCTTGTCGATTAAAGTTACTGAGCTAGTGGACGGTGTTTTCATAGGTTGTACCATGAACCACAATATCGCTGATGGCACTTCTTATTGGACGGTGTTTTTATTGTAA 570 0.4351 MAERARQCKPLAAECFVKPSCQAQESDRICHLTPWDIAMLSLHHIQKGLLFQKPKTLVDQHHFIQNLLEKLKHSLSLALFHFYPLSGRLVTHKTEDPSSYTIFVDCSNSRGARFIHATLDMTISDILSPVDVPPIVNSFFDLHKAVNHDGHTMPLLSIKVTELVDGVFIGCTMNHNIADGTSYWTVFLL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03289 189 Gene3D - 11 188 IPR023213 -
Vimu10g03289 189 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 14 187 - -
Vimu10g03289 189 Pfam Transferase family 16 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03289 Vimu-Chr10 43117533 43118689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03289 71 182 Monolignol Biosynthesis Gene Families AT5G48930 36.522 3.57e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03289 - - gmx:100788297 297.745