Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03287 ATGGGTACTCCTGCCCTACGACGCATTTCGGAGTGTTTTGTCAAGCCTCACTGCTCCAACCACTTCTCCGATCAAATCTGCGATTTAACACCTTGGGATATTGCCATGTTGTCTGTGCACTATATTCAAAAGGGTCTACTCTTCAAGAAGCCTGCAACCCTGCTTCATCAAAACGATTTCATACAAAATCTGTTGGAGAAGCTCAAGCACTCTCTTTCTCTTACCCTCTTCCATTTTTACCCTTTGTCTGGTCGCCTTGTCACTCACAAAACCCAAAACCCTCCCTCTTATATTGTTTCTGTTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATCACCATAGCTGATATCCTCTCCCCCTTTCATGTCCCACCAATTGTTGAATCATTCTTTGACCACCACAAAGCAATCAACCATGACGGTCACTCCATGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTTTCATAGGTTGTTCCATGAACCATGTTATTGGCGATGGAACTTCTTATTGGAATTTCTTCAATTCATGGTCTCAGATCTTTCAAGCACAGTCTCAATCTGAAAACCTTGAATACTATGTTCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCAAATAATTGTAGACCACCGATCTCTCTTCCTTTCAAACATCATGACGAGTTTATAGAGAGATCTGAAAAACCCCTCCACCTGAGAGAGAGATTTTTCCACTTTTCAGCAGAGTCTATTGCCAAACTGAAAGCAAAGGCCAACTCAGAATCCAATACCACAACAATATCTTCCTTCCAGTCATTATCAGCACTTGTTTGGAGGTCCATAACTCGTGCGCGCTCCATACCGTCTGACCAAAAAACAACTTGCAGATTAGCCGCAAGCACTCGATCAAGAATGGAGCCGGCTCTGCCTGAAGAATACTTTGGAAACAGCCTTCATGCAGTGAGTGCAGAAACGACAACAGGGGAATTGCTTGAGAATGATCTAGGATGGGCGGCATGGAAATTGCATGTGGCTGTTAAAAACCTTAACGATAGAGTGGTGTTGCAGTATCTCCGAGAGTGGTTAGATTCTCCTGTGATATATCAAATGGGTCGTTTCTTTGAACCATATTGTGTGATGATGGGTAGCTCCCCGAGGTTCAATATGTATGGGAGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGCTATGCAAATAAATTTGATGGGAAAGTGTCATCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTTCTCACATACAATGAGTGCCTTGGAATCAGACAAGGAATTCATGCATGCAGTTTCTCACTTCAATCCCCTGCTGTTCTAG 1392 0.4404 MGTPALRRISECFVKPHCSNHFSDQICDLTPWDIAMLSVHYIQKGLLFKKPATLLHQNDFIQNLLEKLKHSLSLTLFHFYPLSGRLVTHKTQNPPSYIVSVDCNNSDGARFIHATLDITIADILSPFHVPPIVESFFDHHKAINHDGHSMPLLSIQVTELVDGVFIGCSMNHVIGDGTSYWNFFNSWSQIFQAQSQSENLEYYVPISRQPIHNRWFPNNCRPPISLPFKHHDEFIERSEKPLHLRERFFHFSAESIAKLKAKANSESNTTTISSFQSLSALVWRSITRARSIPSDQKTTCRLAASTRSRMEPALPEEYFGNSLHAVSAETTTGELLENDLGWAAWKLHVAVKNLNDRVVLQYLREWLDSPVIYQMGRFFEPYCVMMGSSPRFNMYGSEFGMGKAVAARSGYANKFDGKVSSYPGREGGGSIDLEVCLFSHTMSALESDKEFMHAVSHFNPLLF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03287 463 Gene3D - 2 225 IPR023213 -
Vimu10g03287 463 Gene3D - 229 447 IPR023213 -
Vimu10g03287 463 FunFam Tryptamine hydroxycinnamoyl transferase 230 449 - -
Vimu10g03287 463 Pfam Transferase family 19 452 - -
Vimu10g03287 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03287 Vimu-Chr10 43106958 43108349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03287 48 446 Monolignol Biosynthesis Gene Families AT5G48930 26.761 9.16e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03287 - - vra:106761257 796.578