Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03284 ATGGCGCAAGTTCCTGACAATGATAACAGTGAAGAGACGCATCCCAGGTTCCAGACGGCGTTGTACGTAGGGGATCTTGACGAGACCATCGACGAGACCCAGCTCTTTAATCTTTTCAATGATGTTGCCAAAGTCGTTTCCGTTCGAATTTGCCGCGACTATGCAACTAGGAAGTCTCTTGGTTACGCCTACGTGAATCACACTACCCGTGACAATGGATTGGTCATTCGTGTTCTGGGTTTGATACGACTCATCGCGTTTGCTCTTGGAGGGATAGGATGGCTCAGCTTTTGTTCTTGCATTGATAGACTAATGGTGAGTGTTGTTTCTATGAGTATTTTAACCTTCATTGCAAATATTAACTACCATGCAGCCGAGCAAGCAATACAAGAGCTAAATTTCATTCCGGTGAATGGCAAAACCATTAGGGTAACGTATGCTAATCGGGACTCCAGTGTTCGTAAGAGTGGTAAAGCTAACCTTTATGTAAAGAATTTGGCTCCATCAGTCCATCACAGGGCTCTATGCAATCACTTTTCGTCTTTTGGGAACATTCTATCTTGCATGGTTGCAACGGATGCTTCTGGCCAGTCTAAAGGTTATGGTTTTGTGCAGTTTGAGAGCGAAGCATCTGCAAAAGAAGCGATTGAAAAGTTAAACGGCTCGGAGCTCAACGGAAAAAAGATCTATGTGTGTCCTTTCGTGTCAAAGCAGGACTTAAATGTTTCTAGTGACGCAAATTTTACAAATGTTTATGTTAAAAACCTGTCAAACACAATAACGGATGCTGAGTTGCAGAATATTTTCGGAGAATATGGTGATATTACTAGTGCTGTAGTGATGAGATATGGAGATGGTAGATCAAAAGGTTTTGGTTTTGTGAATTTTGCAAATGCAGACAATGCGGCTAGAGCTCGGGACGGTCTTGATGGACAGACTTTTCATGGTAAGACTTGGTGTGTTAGAAGAGCCCAGACAAAAACTGAAAGGGAGCGTGAACTGACAGAGCTATATGACCAGAATAGGGGGATTTTCTCTCCTAGGCAAGGTAAAAACTTGTATATAAAGAACTTGGACGATAGTATTGATGATAACAGACTTAAGGAAGTTTTCTCCGAGTTTGGTGTAATAACCTCTGCCAAGGTTACGAAATATGCAAATGGAATAAGTAAAGGAGCTGGATTTGTTGCATACTCAAATCGGGAGGCAGCAAATCGGGCTATTGAGTCGATGAATGGTCGACTAGTTGCTGGCAAACCTCTGTATGTTGCCCTTGCACAGAAAAGGGAAGAGAGAAGAGCAATGTTAGAGGAAGAACTTGATTACCACCTGCAGAATCTTCCTCTCTTAGAGAGGGCAACTGGTCCTCCATTTCCAATCTTAATGCCTCAGCGACACCGACCACCAGGTCTTGGGCAACCGCTCGTGTCACACCAGCAGATGATTCCAAGGGGAAATTTTTATCAAGGTCCTCGTCGCCCCAACTTGCAAAATAGAATGATCCCCTTGGCATCAGCCGTTGCCAGTGTTCCTCCTGCAGAACAGAGGATTGTGCTTGGTGAAATTTTATTCCCGTTAGTACAAAGGTTGGTGCATAATGCAGCACCAAAGGTTACTGGTATGCTTTTAGAGATGGACCAGGCTGAGGTTATACATATGATTCAGTCAGCAGATGCTTTGGAGGAAAAAGTTGCGGCGGCCATGGTTGTATTGAGACGAGTTGAAGAAGAGAGATATAACAGGTTACTGGTGCATAATGCTTCTCTCTTTCTCAACGAAGGCTCTTAG 1788 0.4368 MAQVPDNDNSEETHPRFQTALYVGDLDETIDETQLFNLFNDVAKVVSVRICRDYATRKSLGYAYVNHTTRDNGLVIRVLGLIRLIAFALGGIGWLSFCSCIDRLMVSVVSMSILTFIANINYHAAEQAIQELNFIPVNGKTIRVTYANRDSSVRKSGKANLYVKNLAPSVHHRALCNHFSSFGNILSCMVATDASGQSKGYGFVQFESEASAKEAIEKLNGSELNGKKIYVCPFVSKQDLNVSSDANFTNVYVKNLSNTITDAELQNIFGEYGDITSAVVMRYGDGRSKGFGFVNFANADNAARARDGLDGQTFHGKTWCVRRAQTKTERERELTELYDQNRGIFSPRQGKNLYIKNLDDSIDDNRLKEVFSEFGVITSAKVTKYANGISKGAGFVAYSNREAANRAIESMNGRLVAGKPLYVALAQKREERRAMLEEELDYHLQNLPLLERATGPPFPILMPQRHRPPGLGQPLVSHQQMIPRGNFYQGPRRPNLQNRMIPLASAVASVPPAEQRIVLGEILFPLVQRLVHNAAPKVTGMLLEMDQAEVIHMIQSADALEEKVAAAMVVLRRVEEERYNRLLVHNASLFLNEGS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03284 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 428 IPR000504 GO:0003723
Vimu10g03284 595 SMART rrm1_1 160 232 IPR000504 GO:0003723
Vimu10g03284 595 SMART rrm1_1 250 322 IPR000504 GO:0003723
Vimu10g03284 595 SMART rrm1_1 352 424 IPR000504 GO:0003723
Vimu10g03284 595 SMART rrm1_1 20 79 IPR000504 GO:0003723
Vimu10g03284 595 SUPERFAMILY RNA-binding domain, RBD 153 239 IPR035979 GO:0003676
Vimu10g03284 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 319 IPR000504 GO:0003723
Vimu10g03284 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 229 IPR000504 GO:0003723
Vimu10g03284 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 421 IPR000504 GO:0003723
Vimu10g03284 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 71 IPR000504 GO:0003723
Vimu10g03284 595 Gene3D - 153 239 IPR012677 -
Vimu10g03284 595 SUPERFAMILY RNA-binding domain, RBD 248 432 IPR035979 GO:0003676
Vimu10g03284 595 CDD RRM2_I_PABPs 157 231 IPR045305 -
Vimu10g03284 595 Coils Coil 557 577 - -
Vimu10g03284 595 Gene3D - 3 152 IPR012677 -
Vimu10g03284 595 SMART rrm2_1 352 424 IPR003954 GO:0003676
Vimu10g03284 595 SMART rrm2_1 160 232 IPR003954 GO:0003676
Vimu10g03284 595 Gene3D - 496 576 - -
Vimu10g03284 595 PANTHER RNA BINDING PROTEIN 18 71 - -
Vimu10g03284 595 FunFam Poly(A) binding protein cytoplasmic 1 like 344 432 - -
Vimu10g03284 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 326 IPR000504 GO:0003723
Vimu10g03284 595 SUPERFAMILY RNA-binding domain, RBD 12 71 IPR035979 GO:0003676
Vimu10g03284 595 Gene3D - 240 338 IPR012677 -
Vimu10g03284 595 Gene3D - 339 439 IPR012677 -
Vimu10g03284 595 SUPERFAMILY PABC (PABP) domain 456 578 IPR036053 GO:0003723
Vimu10g03284 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 231 IPR000504 GO:0003723
Vimu10g03284 595 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 499 576 IPR002004 GO:0003723
Vimu10g03284 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 149 IPR000504 GO:0003723
Vimu10g03284 595 FunFam Polyadenylate-binding protein 153 240 - -
Vimu10g03284 595 Pfam Poly-adenylate binding protein, unique domain 507 571 IPR002004 GO:0003723
Vimu10g03284 595 SMART poly_2 511 574 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03284 Vimu-Chr10 43083209 43085857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03284 20 576 Eukaryotic Initiation Factors Gene Family AT2G23350 41.886 1.94e-150 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03284 K13126 - gmx:100799386 452.595