Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03283 ATGACCACCAGCATGAAGGTGCATCACTTCACACGTGCATTCTGGGAGCACGAACCCTTCCTCACCCTTGGCTGCAAGCGATTACGCCCTCTTGCTCCCAAGCTTCCCACCACCACCCCTTCTCTTCCTTTCGATCTCAAGACCTTCATCAGACCAGAAAGTGCTCCCAGAAAACAAGTTTCCTCTCTCCACAATAACAAGGATCCACCTTCACCCCAAGCCCAGGTTGAAACGCATCCAGGAGGGACGCGGTGGAATCCGACGCAAGAACAGATAGGTATATTGGAGATGCTGTACAAAGGAGGGACGAGAACTCCGAATGCTCAGCAGATAGAGCAGATCACTGTTCAGTTAGGAAAGTACGGAAAGATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAGCCTTGCCTTTTCTCACAGTCCTCGAACTCCCACAATTCATTCTGTTGTTACTTTAGAGGCAGCAAAGGGGGAAGTAGTAGATAGAGACGAGGAGGAAGGTAGTCCGTACAAAAAGAAGTGTAGGAGATGGGTATTTGATTGTTTGGAAGAGCAAAGCATGTCGTCGTCGTCAGTGTGTGAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGAAGATGA 678 0.4882 MTTSMKVHHFTRAFWEHEPFLTLGCKRLRPLAPKLPTTTPSLPFDLKTFIRPESAPRKQVSSLHNNKDPPSPQAQVETHPGGTRWNPTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLAFSHSPRTPTIHSVVTLEAAKGEVVDRDEEEGSPYKKKCRRWVFDCLEEQSMSSSSVCEEEEHRTLELFPLHPEGR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03283 225 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Vimu10g03283 225 SUPERFAMILY Homeodomain-like 79 150 IPR009057 -
Vimu10g03283 225 FunFam WUSCHEL-related homeobox 4 82 149 - -
Vimu10g03283 225 MobiDBLite consensus disorder prediction 55 87 - -
Vimu10g03283 225 Gene3D - 83 148 - -
Vimu10g03283 225 MobiDBLite consensus disorder prediction 58 87 - -
Vimu10g03283 225 CDD homeodomain 83 144 IPR001356 GO:0003677
Vimu10g03283 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vimu10g03283 225 SMART HOX_1 80 147 IPR001356 GO:0003677
Vimu10g03283 225 Pfam Homeodomain 83 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03283 Vimu-Chr10 43078430 43079468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03283 5 149 Wox Gene Family AT1G46480 64.198 3.10e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu10g03283 Homeodomain 7.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03283 - - gmx:100781015 392.119