Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03282 ATGGAAGAAGGTTTAGGAGACTGCTGTTCCTCCAACTCCACCACCACCACCACCACCAGGAAAACCCAGAAACGGAAGCAGCAGCAACAACACCAAGACAAACCATACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCCAGGATCTGGCTGGGTTCTTACGCCACCCCTGTCGCTGCCGCACGCGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCTTCCGCCCGCCTCAATTTCCCCGAACTATTGTTCCAAGACGACGACGTTTCAACCCAAGAGGGAAACATGTCCGCTGATTGTATACGCAAGAAAGCGACCCAAGTCGGCGCGAGAGTCGACGCGCTCCAAACCGCGCTTCAATCATCGTCGTCCCACTCCGCTAATTCCAGCCACGTCAGCTCTGACAAACCAGACTTGAACGAGTATCCAAAACCCGAAGATTAG 480 0.5479 MEEGLGDCCSSNSTTTTTTRKTQKRKQQQQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFYLRGPSARLNFPELLFQDDDVSTQEGNMSADCIRKKATQVGARVDALQTALQSSSSHSANSSHVSSDKPDLNEYPKPED 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03282 159 MobiDBLite consensus disorder prediction 1 37 - -
Vimu10g03282 159 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Vimu10g03282 159 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 MobiDBLite consensus disorder prediction 129 148 - -
Vimu10g03282 159 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 MobiDBLite consensus disorder prediction 7 23 - -
Vimu10g03282 159 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Vimu10g03282 159 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Vimu10g03282 159 MobiDBLite consensus disorder prediction 129 159 - -
Vimu10g03282 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 159 - -
Vimu10g03282 159 FunFam Ethylene-responsive transcription factor 2 34 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03282 Vimu-Chr10 43066358 43068894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03282 32 134 AP2-EREBP Transcription Factor Family AT5G67190 73.832 6.55e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g03282 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03282 K09286 - gmx:100801528 253.062