Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03279 ATGTGCTCAGACATCTGCATCCTCTTCTTGTCACCTGTTCTCTCTCTTCTAAAACGCAAAAACTCCTCCATTCCTAGTAGCCAAGCGGAGCGTATCAAATGGACAAATCCCCAATTCCTTCATCAACACACCAAAAACTTCATTCAGTCTTCGACACCCTGTTCTGAGGTTGCTCCAACAATGTCCAACACAAACCATCCATTCCCATTACTGTTACTACTTCTGCTCCTGCCACTGCACGCTTCTTCTTACGCACATTCCTCCCAACTCCATCGTCATATTCCGCCGTTAGTTTTCACCGACGCCCACGCCCTCCTCGCCTTCAAACTTAAAGCCGACGTAAACGACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCACGTGGCAGGGCGTCCAATGCAACGGCCCCAAAGTAGAGCGTCTCCTTCTCCAGGGCTTAGATCTCGCCGGCGTTTGGGCTCCAAACACACTCACGCGTCTCGACCAGCTCCGAGTTCTCAGTTTACAGAACAACTCACTCACGGGAACCATCCCGGACCTCAGCGCTCTCTCCAATCTCAAAAGCCTCTTCCTGGACAACAACCAATTCACCGGTTCTCTCCCTCCTTCACTCTTCTCTCTCCACCGTTTACGAAACTTGGATTTCTCTCACAACAATCTCTCTGGACCTATCTCTGCTGCCTTCACTAACCTAGACCGTCTTCACACACTCCGTCTTAGTTATAACGCTTTTAACGGTTCAGTACCTCCGTTTAACCAGTCCTCTCTTAGAATACTTGAAATCTCCCGCAACAACCTCTCCGGCGCGATTCCCGTGACGCAGACGCTGTTTCGTTTTCCGCCGTCTTCCTTTGCGTTCAACCCTAACCTCTGCGGTGAAATCGTCCGCGTGCAATGCCGTCCTGCGCAGCCGTTCTTCGGGCCCGCTGGGCCACCTAAGACGCCGCTCGGTCAGAGCGCGCAGGTGCACGGCGTCAGTGGCTTAATCAGACAGCCGTACGCGAAGAAGCGACGCGACCGGCGGGCTGTGATAATCGGATTCTCCGCCGGCGTGTTCGTTCTGGTTTGCTCGCTGGTGTGCTTCGCGGCGGCGGTGAGAAAGCAGAGGAGCCGGTGCAATAAGGACCAGCGGTGCGGGATGATGGCGGCGGATGGGGCAGCGGCGGCGGAGGCCGCGGCAGTGATGCGGATGGAGATGGAGAGAGAGTTGGAAGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGTTTGGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGACCAGTTGATGAAGGGTTCCGCGGAGCTTTTAGGGAGAGGGTGTTTGGGAACCACTTACAAGGCGGCTCTTGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGCGGGGAAAATGGCTGCCCATGCAACGAAGGAAGTGTTCGAGCGACACATGGAATCCGTGGGTGGGCTCCGACACTCCAATTTGGTTCCTCTCAGGGCATATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGACTTTCAGCCCAATGGCAGTCTCTTCTCCCTCATACACGGATCGAGATCAAGCAGGGCAAGACCATTACACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTGGTCCATGGCAATCTTAAGTCCACGAATGTTCTTCTTGGACCTGATTTCGAGGCATGCATCACAGATTACTGCCTCTCCGTGTTGACACACCCATCCACATTTGATGAAGATGGCGATTCAGCAGCGTACAGAGCTCCAGAGACTCGCAACCCCAATCATCAGCCAACCCACAAATCCGATGTTTATGCCTATGGGATTTTGTTGCTTGAGCTTCTGACTGGGAAATTTCCCTCAGAGCTCCCATTTATGGTTCCTGGTGACATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGGGGGCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCGGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAAATTGTACTATTGGAGGATACCAGTGAATTGGAACTGCGCAGTGGTGATTCCATGCCTTAG 2166 0.5332 MCSDICILFLSPVLSLLKRKNSSIPSSQAERIKWTNPQFLHQHTKNFIQSSTPCSEVAPTMSNTNHPFPLLLLLLLLPLHASSYAHSSQLHRHIPPLVFTDAHALLAFKLKADVNDHLDFSPLTRGLRFCTWQGVQCNGPKVERLLLQGLDLAGVWAPNTLTRLDQLRVLSLQNNSLTGTIPDLSALSNLKSLFLDNNQFTGSLPPSLFSLHRLRNLDFSHNNLSGPISAAFTNLDRLHTLRLSYNAFNGSVPPFNQSSLRILEISRNNLSGAIPVTQTLFRFPPSSFAFNPNLCGEIVRVQCRPAQPFFGPAGPPKTPLGQSAQVHGVSGLIRQPYAKKRRDRRAVIIGFSAGVFVLVCSLVCFAAAVRKQRSRCNKDQRCGMMAADGAAAAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAALDNRLMVTVKRLDAGKMAAHATKEVFERHMESVGGLRHSNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSTNVLLGPDFEACITDYCLSVLTHPSTFDEDGDSAAYRAPETRNPNHQPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTSELELRSGDSMP 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03279 721 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Vimu10g03279 721 SUPERFAMILY Protein kinase-like (PK-like) 443 698 IPR011009 -
Vimu10g03279 721 Gene3D Ribonuclease Inhibitor 100 211 IPR032675 -
Vimu10g03279 721 ProSiteProfiles Protein kinase domain profile. 439 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03279 721 FunFam Nuclear pore complex protein NUP107 98 254 - -
Vimu10g03279 721 Gene3D Transferase(Phosphotransferase) domain 1 519 712 - -
Vimu10g03279 721 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 73 701 IPR046959 -
Vimu10g03279 721 SUPERFAMILY L domain-like 100 277 - -
Vimu10g03279 721 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Vimu10g03279 721 Pfam Protein tyrosine and serine/threonine kinase 443 697 IPR001245 GO:0004672|GO:0006468
Vimu10g03279 721 Gene3D Ribonuclease Inhibitor 212 296 IPR032675 -
Vimu10g03279 721 Gene3D Phosphorylase Kinase; domain 1 404 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03279 Vimu-Chr10 43015270 43018524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03279 101 719 Receptor kinase-like Gene Family AT5G43020 56.201 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g03279 PK_Tyr_Ser-Thr 3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03279 - - var:108341030 1354.73