Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03276 ATGCTTGTTTCTCGCCACAACTTTCGCCAACAAATCGACCTCCCAGAGCTTAGCCGCCACCTCGCCATCATCTGCCGGAGTCACCACAGCAGCCTCGTCAAGCTCCTCGGTGCTTCCGTCTCCAGCAACGTCATCTTTCTCGTTTACGAATTTGTCCCCGACGCCAGCCTCACCCACTGTCTCCATAACCGCCGGAACTCTAGCTACACTGATCTCGTCATGTGGACCTCTAGGATGCAGATCGCCTCCGACGTCGCTCATGGCCTCGATTACATCCACAATTTCTCCGGTTCAGACTCCGGTTCGGGATCCGTTCTAGTTTCGTGCAATGGGTTGGTGAGGAAAATAAGGAAAATGGGAAGAAGGTTTGTGCTTGAAGAGTTTACGGAGAGAGTTTGTAGAGGAGAAAAGTTGGAGTAG 420 0.5238 MLVSRHNFRQQIDLPELSRHLAIICRSHHSSLVKLLGASVSSNVIFLVYEFVPDASLTHCLHNRRNSSYTDLVMWTSRMQIASDVAHGLDYIHNFSGSDSGSGSVLVSCNGLVRKIRKMGRRFVLEEFTERVCRGEKLE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03276 139 Pfam Protein tyrosine and serine/threonine kinase 14 94 IPR001245 GO:0004672|GO:0006468
Vimu10g03276 139 Gene3D Transferase(Phosphotransferase) domain 1 2 101 - -
Vimu10g03276 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03276 139 SUPERFAMILY Protein kinase-like (PK-like) 13 94 IPR011009 -
Vimu10g03276 139 PANTHER OS09G0572100 PROTEIN 2 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03276 Vimu-Chr10 43002808 43003227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03276 16 136 Receptor kinase-like Gene Family AT1G51940 32.231 7.96e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu10g03276 PK_Tyr_Ser-Thr 6.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03276 - - gmx:100820374 162.925