Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03272 ATGGCTAATCACCACCACCATCATCATGCGCACGACACCAACCTCAAATCCCTTCTCGACACCCTATACTGCTCCGAAGAGCATTGGGAGGAACACGTCGGAGAAGATGAATTAGACCAAGCAGAGGATGATTACCCAACCGCTAATAATATTACTAATAATAACGCTACCAGTAGCACCACCCTAATTCACTCCCTTCGTTCCCCTCATCCGTTGTTGTTCGAAAGCGACATGTTTTGTGACGAACAGGAGTTGACATCGCTGCTGAGGAAAGAAAAACACAACCCTCTAACCACTTTCCTCCGAAGCAACCCTGCGCTGGAGTGTGCTCACAGGGAAGGCGTTGAGTGGATGCTCAGAGTGAACGCTCACTACTCCTTCTCTGCTCTCACAGCTCTTCTTGCCGTCAACTACTTTGACCGCTTCCTCTCCACCTTCCGCTTTCAGGATGGCAAGCCGTGGATGACACATCTCGCTGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGAGGAGACACAGGTTCCCCTTCTCCTAGACCTTCAGGTGGAAGAGGGTAGATACTTGTTCGAAGCCAAAACGATTAAAAGGATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCGCCAACCCCTCTCTCCTTTCTTGATTACATCACAAGAAGACTTGGATTGAAGGATAATCACTGCTGGGACTTCCTTAGGAAGTGCGAAGGCGTTCTTGTCTCTGTCCTCGGAGGTAATTTCGTTACACCTTCATTGGAGATTAATGGGTTATCTACCGTCAGAACTGGCAAGTGCGACGATGATACACGTAGTGAAAAGCGTGGAGCCTTGTCTAGAAGGCGAATACCAGAGACAACTGTTGGGTATTCTGGGATTCGACAAGGTTGGTGGAGTTATGAGAAGGTGAATGAGTGTCGGAAAATGTTGGAATTGTGGTCAGGGTACGAGAAGCAGGATAAAGAATGCATGAAACGGAAATTTGGAAGCGTTCCGGGAAGTCCAAACGGCGTGATGGAGATGTCGTTTAGCTGTGATAGTTCGAACGAGGCGTGGACAGTAGTTGCTGGTGCTTCGGTGTGTTGTTCGGCGGAAGGTTTATGGAAGAAGAGTAGAAGTGAAGTAAAGCGATAA 1146 0.4878 MANHHHHHHAHDTNLKSLLDTLYCSEEHWEEHVGEDELDQAEDDYPTANNITNNNATSSTTLIHSLRSPHPLLFESDMFCDEQELTSLLRKEKHNPLTTFLRSNPALECAHREGVEWMLRVNAHYSFSALTALLAVNYFDRFLSTFRFQDGKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDNHCWDFLRKCEGVLVSVLGGNFVTPSLEINGLSTVRTGKCDDDTRSEKRGALSRRRIPETTVGYSGIRQGWWSYEKVNECRKMLELWSGYEKQDKECMKRKFGSVPGSPNGVMEMSFSCDSSNEAWTVVAGASVCCSAEGLWKKSRSEVKR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03272 381 CDD CYCLIN_AtCycD-like_rpt1 112 208 - -
Vimu10g03272 381 PANTHER CYCLINS 84 232 IPR039361 -
Vimu10g03272 381 Gene3D - 212 239 - -
Vimu10g03272 381 SUPERFAMILY Cyclin-like 82 211 IPR036915 -
Vimu10g03272 381 SMART cyclin_7 116 204 IPR013763 -
Vimu10g03272 381 Pfam Cyclin, N-terminal domain 93 211 IPR006671 -
Vimu10g03272 381 Gene3D - 104 211 - -
Vimu10g03272 381 FunFam D6-type cyclin 94 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03272 Vimu-Chr10 42975476 42976967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03272 18 251 Core Cell Cycle Gene Families AT4G34160 47.863 1.30e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03272 K14505 - gmx:100811122 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03272 10 42975476 42976967 Vimu7g02786 7 23432760 23434069 ECH
Vimu10g03272 10 42975476 42976967 Vimu3g03432 3 47387701 47389574 ECH
Vimu10g03272 10 42975476 42976967 Vimu10g03272 10 42975476 42976967 ECH
Vimu1g02956 1 41940139 41941687 Vimu10g03272 10 42975476 42976967 PCT