Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03267 ATGCCTTCGGCGAAGGAAATAATGGATCGGATAAAAGGGCCATGGAGTCCCGAAGAAGACGAAGCCTTGCGGAGGTTGGTTCAGACTTACGGGCCCAGAAACTGGTCCCTCGTAAGCAAATCCATTCCGGGTCGATCTGGGAAATCGTGCCGGTTGCGGTGGTGCAATCAGCTGTCTCCAGAGGTCCAGCGCCGGCCTTTTACGGCGGAGGAAGACGAAATGATCATGAAGGCGCACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCTCGCCTCCTCAACGGACGCACCGACAACGCCATCAAAAACCATTGGAATTCGACACTGAAGAGGAAATGCTCCGAACCTCCCTCCGACCCTCGGCCTCCGAAAAGAGTCGCCACTGGTTCAGATAGCCCATCCGAATCCGATTTGAGCGATTCGGGTTTACCCGCTACGTCTCCGATCCCACTTTACGAAGCTCTTGCAGGGAGCGTAAGCGTGAAGCTGGTGCCCTCTGTCCTGGTTGCAACTGCGTCTTCTTCCGGAACTGATATCGCGACCTCATTGAGTCTGTCTCTGCCAGGATCGAAGAATGGGCCTGGGGCTGGGCCTGGGGCTGGGCCTGTGATGAAGGAGGAGACCAGGAATGGTGATTCGGAGCAGTTGTTGAGCAAAGAGTTGTTGAAGGTGATGCAAGATATGATACGAGTGGAAGTATGGAATTACATGTCTGGATTGGAACGTAGAGAGGTGTTTACCCAAACGGATGGCATTAGAAACGCGGAAAGGTCGAATACATTGAGGGAAAGAGGTTGA 798 0.5414 MPSAKEIMDRIKGPWSPEEDEALRRLVQTYGPRNWSLVSKSIPGRSGKSCRLRWCNQLSPEVQRRPFTAEEDEMIMKAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSEPPSDPRPPKRVATGSDSPSESDLSDSGLPATSPIPLYEALAGSVSVKLVPSVLVATASSSGTDIATSLSLSLPGSKNGPGAGPGAGPVMKEETRNGDSEQLLSKELLKVMQDMIRVEVWNYMSGLERREVFTQTDGIRNAERSNTLRERG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03267 265 FunFam Transcription factor MYB44 66 112 - -
Vimu10g03267 265 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vimu10g03267 265 MobiDBLite consensus disorder prediction 129 143 - -
Vimu10g03267 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vimu10g03267 265 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
Vimu10g03267 265 Gene3D - 65 131 - -
Vimu10g03267 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vimu10g03267 265 CDD SANT 14 56 IPR001005 -
Vimu10g03267 265 FunFam MYB transcription factor 12 63 - -
Vimu10g03267 265 PANTHER MYB PROTEIN-RELATED 12 134 - -
Vimu10g03267 265 Gene3D - 11 63 - -
Vimu10g03267 265 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vimu10g03267 265 MobiDBLite consensus disorder prediction 103 144 - -
Vimu10g03267 265 CDD SANT 66 109 IPR001005 -
Vimu10g03267 265 SMART sant 63 111 IPR001005 -
Vimu10g03267 265 SMART sant 11 60 IPR001005 -
Vimu10g03267 265 MobiDBLite consensus disorder prediction 184 211 - -
Vimu10g03267 265 Pfam Myb-like DNA-binding domain 15 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03267 Vimu-Chr10 42943525 42945124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03267 8 245 MYB Transcription Factor Family AT4G37260 51.812 4.71e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g03267 Myb_DNA-bind_6 8.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03267 K09422 - gmx:778037 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03267 10 42943525 42945124 Vimu11g00414 11 4405134 4407252 ECH
Vimu10g03267 10 42943525 42945124 Vimu10g03267 10 42943525 42945124 ECH